BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0171.p (251 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 127 6e-31 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 124 9e-30 gi|300313037|ref|YP_003777129.1| short-chain dehydrogenase [Herb... 119 2e-28 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 114 9e-27 gi|300313186|ref|YP_003777278.1| short-chain dehydrogenase [Herb... 111 5e-26 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 127 bits (320), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 7/244 (2%) Query: 8 KVALVTGSGRDVGREIALGLAAEGAIVAV---NYNSSATEAEAVVKQIQDAGGKAKAYRA 64 +VALVTG +G I+ LAA+G V V N ++++ A+A+V AG +A + Sbjct: 9 RVALVTGGAMGIGASISQQLAAKGHTVLVADINLDAASKTADALVA----AGHRAAPLQM 64 Query: 65 NVGAYADVKKMVDDVVADFGRLDILVNNAGVVINERFVNSTPEQWTKQIDVDLYGTIHTS 124 ++G+ + + D+GR D+LVNNAGV F++ E W + ++V++ G + Sbjct: 65 DLGSPESIAAAFAHIEKDYGRCDVLVNNAGVARTYSFLDYPLENWLQTMNVNVTGVLLAG 124 Query: 125 HAAAPHMIKQNGGRIITLVGDSSRIGENGLAIAAAARAGGIALMKSLAKELGRANITANS 184 AA M+KQ GRI+ + S G ++A I L + +A EL + IT NS Sbjct: 125 QHAARLMVKQQWGRIVNISSISGIRAGAGRTAYGTSKAAVIGLTRQMAIELAQYGITVNS 184 Query: 185 ISLGLIETAHSDPEFLAANREKIVRNYPLRRIGTPGDVAPVVTFLASEGAGWVTGQVLSV 244 ++ G ++T + RE R P+RR GT ++A V +LA+E + ++TG V+ V Sbjct: 185 VAPGPVDTPMTQAMHSEQTRESYYRLVPMRRYGTTDEIASAVCYLAAEESAYITGHVIPV 244 Query: 245 NGGF 248 +GGF Sbjct: 245 DGGF 248 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 124 bits (310), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 133/250 (53%), Gaps = 9/250 (3%) Query: 5 LRGKVALVTGSGRDVGREIALGLAAEGAIVAVNYNSSATEAEAVVKQIQDAGGKA-KAYR 63 L+G+VALVTG+ R +GR IA LA +GA V + +S + A A+ + + G +A + Sbjct: 6 LQGQVALVTGASRGIGRAIATELARQGAKV-IGTATSESGAAAITEYLAALGPEAGRGAV 64 Query: 64 ANVGAYADVKKMVDDVVADFGRLDILVNNAGVVINERFVNSTPEQWTKQIDVDLYGTIHT 123 NV +V+ V DFG L ILVNNAG+ ++ + E+W I +L Sbjct: 65 LNVNDAEASVALVEQVQKDFGSLSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRL 124 Query: 124 SHAAAPHMIKQNGGRIITLVGDSSRIGENGLAIAAAARAGGIALMKSLAKELGRANITAN 183 S A M+K GRII + G G AAA+AG + ++LA+E+G NIT N Sbjct: 125 SRAVLRGMMKARTGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVN 184 Query: 184 SISLGLIETAHSDPEFLAANREK---IVRNYPLRRIGTPGDVAPVVTFLASEGAGWVTGQ 240 ++ G I+T + A N ++ I++ PL R+G ++A V FLAS A ++TG Sbjct: 185 CVAPGFIDTDMTR----ALNEQQSAAILQQIPLGRLGAAEEIAYAVAFLASPQAAYITGT 240 Query: 241 VLSVNGGFCM 250 L+VNGG M Sbjct: 241 TLNVNGGMYM 250 >gi|300313037|ref|YP_003777129.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 369 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 118/244 (48%), Gaps = 3/244 (1%) Query: 5 LRGKVALVTGSGRDVGREIALGLAAEGAIVAVNYNSSATEAEAVVKQIQDAGGKAKAYRA 64 L GKVAL+TG +GR +AL A EGA +A+ Y +A K +Q Sbjct: 123 LAGKVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQKDVQALDAPCLLLPG 182 Query: 65 NVGAYADVKKMVDDVVADFGRLDILVNNAGVVINERFVNSTPE-QWTKQIDVDLYGTIHT 123 +VG+ + V V+ +GRLD+LVNNA + + + Q +++ + Sbjct: 183 DVGSPEFCRSAVRAVMDAYGRLDVLVNNAAQQYPAQSIEEISQAQLEHTFRTNIFSMFYM 242 Query: 124 SHAAAPHMIKQNGGRIITLVGDSSRIGENGLAIAAAARAGGIALMKSLAKELGRANITAN 183 A P + + G RII ++ G L AA + +A +SL+++L A I N Sbjct: 243 VKEAMPFLTR--GARIINTTSVTAYRGSKHLVDYAATKGAIVAFTRSLSQQLASAGIHVN 300 Query: 184 SISLGLIETAHSDPEFLAANREKIVRNYPLRRIGTPGDVAPVVTFLASEGAGWVTGQVLS 243 +++ G I T F A +N PL R G P +VAP FLA+EGA ++TGQVL Sbjct: 301 AVAPGPIWTPLIPASFSAEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTGQVLH 360 Query: 244 VNGG 247 NGG Sbjct: 361 PNGG 364 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 114 bits (284), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 136/257 (52%), Gaps = 22/257 (8%) Query: 3 MGLRGKVALVTG-SGRD-VGREIALGLAAEGA-IVAVNYNSSATEAEAVVKQIQDAGGKA 59 M L+ KVA++TG +G++ +G A +AA+GA IV ++ +++ + AG A Sbjct: 1 MLLKDKVAIITGGAGQNGLGFSTARLMAAQGARIVILD-----------LERAEPAGAAA 49 Query: 60 KAYRANVGAYADVKK------MVDDVVADFGRLDILVNNAGVVINERFVNSTPEQWTKQI 113 + ++G ADV V+ FGR+DILVNNAGV + + T + + + + Sbjct: 50 RLGAQHLGLVADVTDKAACEAAAAAVLKQFGRIDILVNNAGVTQPAKLLEITGKDYDRIL 109 Query: 114 DVDLYGTIHTSHAAAPHMIKQNGGRIITLVGDSSRIGEN--GLAIAAAARAGGIALMKSL 171 DV L GT++ S A P M Q G I+ + S++ G G +AA+AG + L +++ Sbjct: 110 DVSLRGTLYMSQAVLPAMQAQQSGSIVCISSVSAQRGGGILGGPHYSAAKAGVLGLARAM 169 Query: 172 AKELGRANITANSISLGLIETAHSDPEFLAANREKIVRNYPLRRIGTPGDVAPVVTFLAS 231 A+E G I N I+ GLI T + A + +I + PL R+G P DV V FLAS Sbjct: 170 AREFGPQGIRVNCITPGLISTDINKDILSAEKKAEIAQTIPLGRLGGPDDVGGVCVFLAS 229 Query: 232 EGAGWVTGQVLSVNGGF 248 + + + TG L VNGG Sbjct: 230 DLSQYCTGVTLDVNGGM 246 >gi|300313186|ref|YP_003777278.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 111 bits (278), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 132/249 (53%), Gaps = 11/249 (4%) Query: 5 LRGKVALVTGSGRDVGREIALGLAAEGAIVAVNYNSSATEAEAVVKQIQDAGGKAKAYRA 64 L KVA V G R +G I LAAEGA VA Y SS +A+A+V +Q GG+A A +A Sbjct: 15 LVSKVAFVQGGSRGIGAAIVQRLAAEGATVAFTYVSSPDKAQALVSSVQAKGGRALAIQA 74 Query: 65 NVGAYADVKKMVDDVVADFGRLDILVNNAGVVINERFVNSTPEQWTKQIDVDLYGTIHTS 124 + A +++ + FGRLDILVNNAGV+ E + + V++ + Sbjct: 75 DSADAAALQQAIRLAAETFGRLDILVNNAGVLAMGPLDQFKLEDLDRTLAVNVRSVFVAT 134 Query: 125 HAAAPHMIKQNGGRIITL-VGDSSRIGENGLAIAAAARAGGIALMKSLAKELGRANITAN 183 AA +M GGR+I++ ++ RI G A+ A +++ + L K LA++LG IT N Sbjct: 135 QEAARYM--GEGGRVISIGSTNADRIPFAGGAVYAMSKSALVGLTKGLARDLGPRGITVN 192 Query: 184 SISLGLIETAHSDP---EFLAANREKIVRNYPLRRIGTPGDVAPVVTFLASEGAGWVTGQ 240 ++ G ++T +P +F A+ + L R G ++A V +LA +G++TG Sbjct: 193 NVQPGPVDT-DMNPASGDFAAS----LTGLMALPRYGKAEEIASFVAYLAGPESGYITGA 247 Query: 241 VLSVNGGFC 249 L ++GGF Sbjct: 248 NLMIDGGFS 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 716,955 Number of extensions: 26107 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 41 Length of query: 251 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,226,865 Effective search space: 206113320 Effective search space used: 206113320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)