BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0168.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309897|ref|YP_003773989.1| transcription regulator protein...    87   2e-18
gi|300309900|ref|YP_003773992.1| transcription regulator protein...    64   1e-11

>gi|300309897|ref|YP_003773989.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 148

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 61/95 (64%)

Query: 183 CSVARTLQIIGDRWSFLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVEKRL 242
           C VAR++ ++GDRW+ L++R+ F G+RRF +FQ N+ ++ NIL DRL++L +  ++E + 
Sbjct: 12  CPVARSVDVVGDRWALLIVRDAFDGIRRFGDFQRNLSVSKNILADRLRKLVDANILEMQA 71

Query: 243 YQMRPERFEYRFTAKGRDLYGSMLVMRRWGDKWLF 277
                   EY  T  G  L+  ++ +R+WG+  LF
Sbjct: 72  ASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLF 106



 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%)

Query: 9   HFPSFESFGSVAKTVEILSDAWSFLVLRECFFGARRFEQYQRVLRLPRNTLIKRLNKLID 68
           H    E    VA++V+++ D W+ L++R+ F G RRF  +QR L + +N L  RL KL+D
Sbjct: 4   HADHHEEHCPVARSVDVVGDRWALLIVRDAFDGIRRFGDFQRNLSVSKNILADRLRKLVD 63

Query: 69  LGLLRRSSYSPSSTRFEYRFTDKGRDLYSTMLALLKYGDTWLSGDEPPPLQLIHKRCGKA 128
             +L   + S  ++  EY  T+ G  L+  ++AL ++G+  L         LI    GK 
Sbjct: 64  ANILEMQAASDGTSYQEYVLTETGLGLFPLVVALRQWGEAHLFKRGEKHSVLIDTDTGKP 123

Query: 129 CSPVVVCSECTSPIDPHDIQYRK 151
            + +   S   S ++P     RK
Sbjct: 124 VAYMAPISRDGSHLNPARTLVRK 146


>gi|300309900|ref|YP_003773992.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 183 CSVAR-TLQIIGDRWSFLLIREMFFGVRRFDEFQTNI-GIASNILTDRLQRLTEYGVVEK 240
           C V R  L  +GD+WS  +I  +  G RRF+E +  I GI+  +LT  L+ L   G++ +
Sbjct: 20  CRVTREILDRVGDKWSLYIIATLANGTRRFNELKREIDGISQRMLTLTLRGLERDGLITR 79

Query: 241 RLYQMRPERFEYRFTAKGRDLYGSMLVMRRWGD 273
            +Y   P R +Y  TA G  L+G ++ + +W D
Sbjct: 80  TIYPTIPPRVDYELTALGMTLWGPVMSLVKWAD 112


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,475
Number of extensions: 39816
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)