BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0163.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 394 e-111 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 196 2e-51 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 191 5e-50 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 175 2e-45 gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 168 3e-43 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 394 bits (1012), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/242 (81%), Positives = 212/242 (87%), Gaps = 3/242 (1%) Query: 1 MTQSATPA---LEISGLHAWYGESHILHDVNLSVNQGEVVTLLGRNGAGRTTTLRSIMGL 57 MT S++ A L+IS L +WYGESHILH+VNL+V+QGEVVTLLGRNGAGRTTTLRSIMGL Sbjct: 1 MTTSSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL 60 Query: 58 TGTRKGSIRINGVESIGLSTHKIPHLSVGYCPEERGIFSSLSTEENLLLPPVLRGGGTPM 117 GTRKGSI+ING E+I L+THKI H VGYCPEERGIFSSLS EENL+LPP + M Sbjct: 61 VGTRKGSIKINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGM 120 Query: 118 SIDEIYGMFPNLLERKASQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQT 177 SIDEIY MFPNL ER+ SQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQ Sbjct: 121 SIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQA 180 Query: 178 LARMILTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVERFAASELEEKMPVLNELL 237 LARMI TLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVE FA+S+LE KM LNELL Sbjct: 181 LARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELL 240 Query: 238 GV 239 GV Sbjct: 241 GV 242 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 196 bits (497), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 108/231 (46%), Positives = 146/231 (63%), Gaps = 3/231 (1%) Query: 9 LEISGLHAWYGESHILHDVNLSVNQGEVVTLLGRNGAGRTTTLRSIMGLTGTRKGSIRIN 68 L++ +H +YG+SHIL V+L V+ GEVVTLLGRNGAG+TTTL+SI+G+ +G + Sbjct: 3 LQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLFE 62 Query: 69 GVESIGLSTHKIPHLSVGYCPEERGIFSSLSTEENLLLPPVLRGGGTPMSIDEIYGMFPN 128 G GL ++KI V PE RGIF L+ EENL + + ++EIY +FP Sbjct: 63 GQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKE---SAWGLEEIYAIFPR 119 Query: 129 LLERKASQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQTLARMILTLKAK 188 L ER+ + G +LSGGEQQMLA+AR L T R+L+LDE EGLAPVIV + I +KA Sbjct: 120 LKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKAT 179 Query: 189 GYTIVMVEQNFRFAAPLADRFYVMEHGQIVERFAASELEEKMPVLNELLGV 239 G +I++VEQN LADR Y++E G+IV + +E V + LGV Sbjct: 180 GMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 191 bits (485), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 101/213 (47%), Positives = 139/213 (65%), Gaps = 5/213 (2%) Query: 9 LEISGLHAWYGESHILHDVNLSVNQGEVVTLLGRNGAGRTTTLRSIMGLTGTRKGSIRIN 68 L++ GLH WY ++HIL ++L + GEVV L+GRNGAG++TTL+++MGL R+G IR+ Sbjct: 6 LQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRLA 65 Query: 69 GVESIGLSTHKIPHLSVGYCPEERGIFSSLSTEENL---LLPPVLRGGGTPMSIDEIYGM 125 G + L+ H+ L +GY PE+R IF+ LS ENL PP R G + ++ + Sbjct: 66 GRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQPP--RPGAPHWTPQALFEL 123 Query: 126 FPNLLERKASQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQTLARMILTL 185 FPNL G R+SGGEQQML +AR L RLLLLDE SEG+APVIV+ +A MI L Sbjct: 124 FPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQEL 183 Query: 186 KAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIV 218 K G I++ EQN FA+ + DR Y+++ G+IV Sbjct: 184 KRSGIAILLCEQNLHFASLVCDRGYLLDQGRIV 216 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 175 bits (444), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/236 (42%), Positives = 143/236 (60%), Gaps = 10/236 (4%) Query: 9 LEISGLHAWYGESHILHDVNLSVNQGEVVTLLGRNGAGRTTTLRSIMGLTGTRKGSIRIN 68 L ++GL A YG S +LH V+L+V +GE+V++LGRNGAGR+T L+++MGL +R G R Sbjct: 8 LSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR-GDCRFE 66 Query: 69 GVESIGLSTHKIPHLSVGYCPEERGIFSSLSTEENLLL-----PPVLRGGGTPMSIDEIY 123 G + GL TH I L +GY PE R +F +LS +NLLL P RG D+I+ Sbjct: 67 GRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRG----WCEDDIH 122 Query: 124 GMFPNLLERKASQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQTLARMIL 183 +FP L +R+ LSGGEQQMLA+ R L LLL+DE +EGLAP +V+ +AR + Sbjct: 123 ALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQ 182 Query: 184 TLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVERFAASELEEKMPVLNELLGV 239 L+ +G +++VEQ A L+ R YVM G++V + L + V E L + Sbjct: 183 ELRTRGVAVLLVEQKQALALELSQRVYVMGRGEMVFEGTPTGLSAQETVQREWLAL 238 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 168 bits (426), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 100/232 (43%), Positives = 146/232 (62%), Gaps = 5/232 (2%) Query: 9 LEISGLHAWYGESHILHDVNLSVNQGEVVTLLGRNGAGRTTTLRSIMGLTGTRKGSIRIN 68 L + + A YG+S +L DV+ ++ +GE + LLGRNG G+T+ L ++MGLT GSIR Sbjct: 5 LALDRVSAGYGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIRWR 64 Query: 69 GVESIGLSTHKIPHLSVGYCPEERGIFSSLSTEENLLLPPVLRGGGTPMSIDEIYGMFPN 128 G + ++THK H +G+ P+ER +F SLS EE+L + V RGG + +IY +FP Sbjct: 65 GGDIARVATHKRAHAGLGWVPQERFMFPSLSVEEHLTV--VERGG--KWDLQKIYQIFPR 120 Query: 129 LLERKASQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQTLARMILTLKA- 187 L ER+ + G +LSGGEQQMLA+AR L +LLLDE EGLAP+IVQ L ++I L + Sbjct: 121 LHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRLVSE 180 Query: 188 KGYTIVMVEQNFRFAAPLADRFYVMEHGQIVERFAASELEEKMPVLNELLGV 239 +G ++++VEQ+ R A L R V++ G+IV + L L+ L+ V Sbjct: 181 EGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQSLLADGDKLDRLVAV 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 743,229 Number of extensions: 30891 Number of successful extensions: 475 Number of sequences better than 1.0e-08: 107 Number of HSP's gapped: 347 Number of HSP's successfully gapped: 116 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)