BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0162.p (293 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 452 e-128 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 191 4e-50 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 191 5e-50 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 187 1e-48 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 187 1e-48 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 452 bits (1163), Expect = e-128, Method: Compositional matrix adjust. Identities = 212/256 (82%), Positives = 238/256 (92%) Query: 37 MTDVILETHNLTKAFKGFTAVNNVNLRVTRGHIHALIGPNGAGKTTCFNLLTKFLTPSSG 96 MTDVILET NLTK FKGFTAV+ VNL++ RGHIHALIGPNGAGKTTCFNLLTKFL P+SG Sbjct: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 Query: 97 DILFNGKNITACQPAEIARQGVIRSFQISAVFPHLTVLENVRVGLQRKLGTSFYFWQSAE 156 ILFNG++IT PA+IARQG+IRSFQISAVFPH++VLENVR+GLQRKLGTSF+FW++ E Sbjct: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGE 120 Query: 157 TLNQLNERAMGLLEEVDLTSFAHTLTLDLPYGRKRALEIATTLAMDPELMLLDEPTQGMG 216 +L QL+ERAM LLEEVDLTSFAHT T+DLPYGRKRALEIATTLAM+PELMLLDEPTQGMG Sbjct: 121 SLKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMG 180 Query: 217 HEDVHRVTELIRKVSVGRTILMVEHNMSVIAGICDKISVLQRGAVLAEGSYQEVSRNPQV 276 HEDV RVT LI+KVS GRTILMVEHNMSVIAGICD+ISVLQRGA+LAEGSY+EVSRNPQV Sbjct: 181 HEDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQV 240 Query: 277 MEAYMGTSATALEGAH 292 MEAYMG+++ L+GAH Sbjct: 241 MEAYMGSTSAELQGAH 256 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 191 bits (486), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 150/254 (59%), Gaps = 6/254 (2%) Query: 37 MTDVILETHNLTKAFKGFTAVNNVNLRVTRGHIHALIGPNGAGKTTCFNLLTKFLTPSSG 96 M+ +L+ +++K F G A+N V + + RG I+ LIGPNGAGKTT FN++T P +G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 97 DILFNGKNITACQPAEIARQGVIRSFQISAVFPHLTVLENVRVGL-----QRKLGTSFYF 151 +GK + P E+A+ G+ R+FQ +F +TVLENV VG Q G F Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 152 WQSAETLNQLNERAMGLLEEVDLTSFAHTLTLDLPYGRKRALEIATTLAMDPELMLLDEP 211 + E + E++ LL+ V + FA L YG +R LEIA LA DP+L+ LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 212 TQGMGHEDVHRVTELIRKVSV-GRTILMVEHNMSVIAGICDKISVLQRGAVLAEGSYQEV 270 GM + + EL+ K+ G+TIL++EH++ ++ G+C++I+VL G +AEG +V Sbjct: 181 AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 271 SRNPQVMEAYMGTS 284 +NP V+EAY+G Sbjct: 241 QKNPAVIEAYLGAG 254 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 191 bits (486), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 150/254 (59%), Gaps = 6/254 (2%) Query: 37 MTDVILETHNLTKAFKGFTAVNNVNLRVTRGHIHALIGPNGAGKTTCFNLLTKFLTPSSG 96 M+ +L+ +++K F G A+N V + + RG I+ LIGPNGAGKTT FN++T P +G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 97 DILFNGKNITACQPAEIARQGVIRSFQISAVFPHLTVLENVRVGL-----QRKLGTSFYF 151 +GK + P E+A+ G+ R+FQ +F +TVLENV VG Q G F Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 152 WQSAETLNQLNERAMGLLEEVDLTSFAHTLTLDLPYGRKRALEIATTLAMDPELMLLDEP 211 + E + E++ LL+ V + FA L YG +R LEIA LA DP+L+ LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 212 TQGMGHEDVHRVTELIRKVSV-GRTILMVEHNMSVIAGICDKISVLQRGAVLAEGSYQEV 270 GM + + EL+ K+ G+TIL++EH++ ++ G+C++I+VL G +AEG +V Sbjct: 181 AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 271 SRNPQVMEAYMGTS 284 +NP V+EAY+G Sbjct: 241 QKNPAVIEAYLGAG 254 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 152/244 (62%) Query: 39 DVILETHNLTKAFKGFTAVNNVNLRVTRGHIHALIGPNGAGKTTCFNLLTKFLTPSSGDI 98 D L T L+K + F A ++++L G HALIGPNGAGKTT NLLT PSSG + Sbjct: 9 DTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRV 68 Query: 99 LFNGKNITACQPAEIARQGVIRSFQISAVFPHLTVLENVRVGLQRKLGTSFYFWQSAETL 158 F G++ITA ++G+ R+FQI+ +F LTVLE+V + +Q + G + ++Q+ + Sbjct: 69 WFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQ 128 Query: 159 NQLNERAMGLLEEVDLTSFAHTLTLDLPYGRKRALEIATTLAMDPELMLLDEPTQGMGHE 218 ++ + AM LL + L A++LT +L YG++R +EIA LA P+++LLDEP G+ Sbjct: 129 TEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPSA 188 Query: 219 DVHRVTELIRKVSVGRTILMVEHNMSVIAGICDKISVLQRGAVLAEGSYQEVSRNPQVME 278 + + E+I ++ TI+ +EH+M ++ ++I+VL G VL EG+ E++ +P+V E Sbjct: 189 ESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVKE 248 Query: 279 AYMG 282 Y+G Sbjct: 249 VYLG 252 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 103/251 (41%), Positives = 149/251 (59%), Gaps = 10/251 (3%) Query: 40 VILETHNLTKAFKGFTAVNNVNLRVTRGHIHALIGPNGAGKTTCFNLLTKFLTPSSGDIL 99 ++L+ ++++K F G + VN V +G I LIGPNGAGKTT FNL+T L SSG I Sbjct: 1 MLLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 Query: 100 FNGKNITACQPAEIARQGVIRSFQISAVFPHLTVLENVRVGLQRKLG-------TSFYFW 152 FN +I A P +I +G+ R+FQ VF +T+LENV VG+ L + + Sbjct: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 Query: 153 QSAETLNQLNERAMGLLEEVDLTSFAHTLTLDLPYGRKRALEIATTLAMDPELMLLDEPT 212 ++AE + ERA+ LL V L AH L L YG +R LE A LA P+L+LLDEP Sbjct: 121 RNAEK--EARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPV 178 Query: 213 QGMG-HEDVHRVTELIRKVSVGRTILMVEHNMSVIAGICDKISVLQRGAVLAEGSYQEVS 271 GM E ++E++ G TI M+EH+M + G+C++I+VL G ++AEG+ ++ Sbjct: 179 AGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIK 238 Query: 272 RNPQVMEAYMG 282 N +V+EAY+G Sbjct: 239 NNQEVIEAYLG 249 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 837,287 Number of extensions: 33071 Number of successful extensions: 494 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 133 Length of query: 293 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 209 Effective length of database: 1,222,130 Effective search space: 255425170 Effective search space used: 255425170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)