BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0161.p (402 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 451 e-128 gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 428 e-121 gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 415 e-117 gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t... 393 e-110 gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC t... 91 1e-19 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 451 bits (1160), Expect = e-128, Method: Compositional matrix adjust. Identities = 211/370 (57%), Positives = 282/370 (76%), Gaps = 2/370 (0%) Query: 29 LRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFGGSVLGRPIEVLVNDHQNKPDIAASKAR 88 ++IG +TD+SG +S GQG A+KMA+ D GG++ G+ IE+LV DHQNK D+AASKAR Sbjct: 31 IKIGFITDISGVYSDIDGQGGAEAIKMAIADMGGAINGKKIELLVADHQNKADVAASKAR 90 Query: 89 EWFDTQNVKMINNLINSGVAISVMNVAKEKNGIAIINGSGSSRITGDACTPNSIHYAYDT 148 EWFD Q V M+ NSG A++ VA EK + + G+GS+R+T + C+P ++HYAYDT Sbjct: 91 EWFDQQGVDMLIGGTNSGTALASAKVAAEKKKVYMQIGAGSARLTNEECSPYTVHYAYDT 150 Query: 149 YALANGTGNAIIKQGGDSWFFLTADYAFGHSLEADTSAAVKAKGGKVIGAVRYPLNASDH 208 ALA GTG+A++KQGG SWFFLTADYAFGHSLE+DT+ VKA GG V+GAV++PL ASD Sbjct: 151 VALAKGTGSAVVKQGGKSWFFLTADYAFGHSLESDTANVVKASGGTVVGAVKHPLGASDF 210 Query: 209 SSFLLQAQQSKAKVVALAGSGTGFINAVKSAHEFGVTQSGKQILAGLLVWITDVDAMGLE 268 SSFLLQAQ SKA+++ LA +G FIN+VK+A+EFG+T++ K LAGLLV+I DV ++ L+ Sbjct: 211 SSFLLQAQSSKAQIIGLANAGGDFINSVKAANEFGITKTAK--LAGLLVFINDVHSLTLK 268 Query: 269 VAQGLTLTNGFYWDRDEETRKWSRRFFALMKRMPTMGDAGDYSSTLHYLQAVKAAGTDDT 328 +GL LT+ +YWD +EETR +++R+FA+ K+MP+ A DYS+ L YL+ VK GTDD+ Sbjct: 269 NTEGLYLTDSWYWDANEETRAFAKRYFAVRKKMPSSLQAADYSAALQYLKVVKEIGTDDS 328 Query: 329 AAVMAKMKATPINDMFAKNGKIRADGRMVHDMYVYQVKKPSESKYPWDYYKYIATIPADQ 388 VMA ++ NDM+ KNG +RADGR++HDMY+YQVK SESKYPWDYYK + TIPA+Q Sbjct: 329 DKVMAALRKAKFNDMYQKNGYLRADGRVMHDMYLYQVKAQSESKYPWDYYKLVQTIPAEQ 388 Query: 389 AYRPLSEGGC 398 A+ +E C Sbjct: 389 AWTTKAESKC 398 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 428 bits (1101), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/400 (51%), Positives = 288/400 (72%), Gaps = 4/400 (1%) Query: 4 LVKMAPAALLMAMAMNGVMAQAAK-PLRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFGG 62 L ++A A + + +AQ + +RIG +TD+SG ++ G G + A++MAV DFGG Sbjct: 7 LRRLAAACAIAGIFSGAALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAVADFGG 66 Query: 63 SVLGRPIEVLVNDHQNKPDIAASKAREWFDTQNVKMINNLINSGVAISVMNVAKEKNGIA 122 +VLG+PIEV+ DHQNK DIAA++AREW D + + M+ +NS A+S+ V EK + Sbjct: 67 TVLGKPIEVISADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAEKKRVY 126 Query: 123 IINGSGSSRITGDACTPNSIHYAYDTYALANGTGNAIIKQGGDSWFFLTADYAFGHSLEA 182 I G+G++R+T + CTP ++HY YDT ALA GT +A+IKQGG SWFFL ADYAFGHSL Sbjct: 127 INIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAFGHSLAN 186 Query: 183 DTSAAVKAKGGKVIGAVRYPLNASDHSSFLLQAQQSKAKVVALAGSGTGFINAVKSAHEF 242 DTSA VKA GG V+G++++P +SD SSFLLQAQ SKA+++ LA +G +N++K+A EF Sbjct: 187 DTSAVVKASGGTVVGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAAKEF 246 Query: 243 GVTQSGKQILAGLLVWITDVDAMGLEVAQGLTLTNGFYWDRDEETRKWSRRFFALMKRMP 302 GVT++ K L GLL+ I D+ A+GL A+GL +T+ +YWD+DE +RK++ RFF MK+MP Sbjct: 247 GVTKTMK--LVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKMKKMP 304 Query: 303 TMGDAGDYSSTLHYLQAVKAAGTDDTAAVMAKMKATPINDMFAKNGKIRADGRMVHDMYV 362 + A YS+T YL+AV+A GTDD+ VMA++K T I+D + K G IRADGR +HDMY+ Sbjct: 305 STHQAAAYSATTTYLKAVQAIGTDDSTKVMAQLKKTRIDDFYNK-GSIRADGRNIHDMYL 363 Query: 363 YQVKKPSESKYPWDYYKYIATIPADQAYRPLSEGGCPLVK 402 YQVK P+ESK PWDY K + TIP +QA+ +++ C L+K Sbjct: 364 YQVKSPAESKKPWDYLKLLETIPGEQAFTSVADSKCSLLK 403 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 415 bits (1067), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/395 (51%), Positives = 273/395 (69%), Gaps = 2/395 (0%) Query: 8 APAALLMAMAMNGVMAQAAKPLRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFGGSVLGR 67 A A L+ A+ A ++IG +TD+SG ++ GQG V A++MA+ D GG++ G+ Sbjct: 12 ATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGAINGK 71 Query: 68 PIEVLVNDHQNKPDIAASKAREWFDTQNVKMINNLINSGVAISVMNVAKEKNGIAIINGS 127 +E++ DHQNK DIAA+KAREWFD V M+ +NS ++++ VA EK + I G+ Sbjct: 72 KVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVGA 131 Query: 128 GSSRITGDACTPNSIHYAYDTYALANGTGNAIIKQGGDSWFFLTADYAFGHSLEADTSAA 187 G++R T + C +I YAYDT ALA GTG AI +QGG SW+FLTADYAFG SLE DTS Sbjct: 132 GTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTSEV 191 Query: 188 VKAKGGKVIGAVRYPLNASDHSSFLLQAQQSKAKVVALAGSGTGFINAVKSAHEFGVTQS 247 VK+ GG V+GA R PL SD SSFLLQAQ SKA+++ LA +G INA+K+A+EFGV ++ Sbjct: 192 VKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVNKT 251 Query: 248 GKQILAGLLVWITDVDAMGLEVAQGLTLTNGFYWDRDEETRKWSRRFFALMKRMPTMGDA 307 K LAGLL++I D ++GL + QG+ LT+G+YWD +++TR W+ R+F MK+MP+M A Sbjct: 252 MK--LAGLLIFINDTHSLGLSLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQA 309 Query: 308 GDYSSTLHYLQAVKAAGTDDTAAVMAKMKATPINDMFAKNGKIRADGRMVHDMYVYQVKK 367 GD S+ YL+AVKA G+ D VM ++ IND F NG +R DGRMVHDMY+ +VKK Sbjct: 310 GDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVKK 369 Query: 368 PSESKYPWDYYKYIATIPADQAYRPLSEGGCPLVK 402 PSESK PWDYYK + TIP +QAY +E C L K Sbjct: 370 PSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 >gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/383 (52%), Positives = 259/383 (67%), Gaps = 6/383 (1%) Query: 23 AQAAKPLRIGVMTDLSGQFSHEAGQGAVTAVKMAVQD-FGGSVLGRPIEVLVNDHQNKPD 81 AQ A ++IGV+TD+SG +S GQG+V A KMAV+D G IE+L D+QNKPD Sbjct: 30 AQDANTVKIGVLTDMSGPYSAMGGQGSVVAAKMAVEDCLKNECKGMKIEILSADNQNKPD 89 Query: 82 IAASKAREWFDTQNVKMINNLINSGVAISVMNVAKEKNGIAIINGSGSSRITGDACTPNS 141 + ++AREW D V+ I +L NS VA++V + K+K GIA+ +G + +T C PN Sbjct: 90 VGVTRAREWLDRDKVEAIADLTNSSVALAVQKLIKDKGGIAMYSGPATGALTTAECAPNG 149 Query: 142 IHYAYDTYALANGTGNAIIKQGGDSWFFLTADYAFGHSLEADTSAAVKAKGGKVIGAVRY 201 H+ +DTY+ A G A+ K G SW+F+T DYAFGHSLE D S VKA GG V+G+VR+ Sbjct: 150 FHWMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVVGSVRH 209 Query: 202 PLNASDHSSFLLQAQQSKAKVVALAGSGTGFINAVKSAHEFGVTQSGK-QILAGLLVWIT 260 PLNASD SSFLLQAQ SKA+V+ LA GT +NA+K A F V GK Q L LLV+++ Sbjct: 210 PLNASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAV--GGKDQRLVALLVFLS 267 Query: 261 DVDAMGLEVAQGLTLTNGFYWDRDEETRKWSRRFFALMKRM-PTMGDAGDYSSTLHYLQA 319 DV A+GLE AQGL T+GFYWD DE+TR +S+RF + K + PTM AG YSS +L+A Sbjct: 268 DVHALGLEAAQGLVYTDGFYWDYDEQTRAFSKRFESQFKNIKPTMVQAGVYSSVYQFLKA 327 Query: 320 VKAAGTDDTAAVMAKMKATPINDMFAKNGKIRADGRMVHDMYVYQVKKPSESKYPWDYYK 379 AA T D V KM+ PI D +N IR DGR++HDMY+YQVK P+ESK PWDY K Sbjct: 328 RAAAKTSDWKVVAQKMREIPIADAVMRNASIRPDGRVIHDMYLYQVKTPAESKGPWDYLK 387 Query: 380 YIATIPADQAYRPLSEGGCPLVK 402 ++ IPA QA+RP+ + CPLVK Sbjct: 388 LLSVIPAQQAFRPM-DAACPLVK 409 >gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 397 Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 94/406 (23%), Positives = 177/406 (43%), Gaps = 24/406 (5%) Query: 4 LVKMAPAALLMAMAMNGVMAQAAKPLRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFGGS 63 +K++ A A++ + V AQA + + G +SG F+ G+ A +K+A+Q +G Sbjct: 7 FLKLSALAAPGALSYHDVFAQA-ESIAFGCPVPMSGPFAAN-GKFADLGMKLALQKYG-K 63 Query: 64 VLGRPIEVLVNDHQNKPDIAASKAREWFDTQNVKMINNLINSGVAISVMNVAKEKNGIAI 123 VLG+ + D + KP A K +E + + + I SG A++ M +K G Sbjct: 64 VLGKSTSYVNLDTEGKPATAVRKMQESIE-KGTRFFAGGILSGEALA-MGKEADKAGAVF 121 Query: 124 INGSGSSRITGDACTPNSIHYAYDTYALANGTGNAIIKQ--GGDSWFFLTADYAFGHSLE 181 I +G+ ITG C + ++ T+ T ++++ W+ +T Y FG L Sbjct: 122 ITTAGADEITGSDCNRATFRWSVPTFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGEGLL 181 Query: 182 ADTSAAVKAKGGKVIGAVRYPLNASDHSSFLLQAQQSKAKVVALAGSGTGFINAVKSAHE 241 + K KG + +G + L + S +L A +K V+ L G+ + ++ A Sbjct: 182 SAAKNIFKEKGIEHVGNSYHSLTEKEFSGYLTNAIAAKPDVLLLLNFGSQSSDTLRQAVS 241 Query: 242 FGVTQSGKQILAGLLVW---ITDVDAMGLEVAQGLTLTNGFYWDRDEETRKWSRRFFAL- 297 FG+ K L+ W + + +G ++ G+ YW + +++ F L Sbjct: 242 FGM----KNNCTILMAWASGLEQFETLGADICDGVYF-GAQYWHAIDAP--FNKEFVKLV 294 Query: 298 ---MKRMPTMGDAGDYSSTLHYLQAVKAAGTDDTAAVMAKMKATPINDMFAKNGKIRADG 354 +K P AG Y T L A+ A + D AV+A M+ + + D Sbjct: 295 NDNLKIDPNYSLAGSYICTKIILDAIIKANSTDPKAVIAAMEGMKYEGLTGSEEIRKGDH 354 Query: 355 RMVHDMYVYQVKKPSESKYPWDYYKYIATIPADQAYRPLSEGGCPL 400 +++ + Y+ + K ++ DY +++ +++ PL + C L Sbjct: 355 QVIKNYYLLKGKAKAKMANKNDYADIVSS---GKSFLPLEKTQCKL 397 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,237,251 Number of extensions: 52418 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 9 Length of query: 402 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 315 Effective length of database: 1,207,925 Effective search space: 380496375 Effective search space used: 380496375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)