BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0160.p (521 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 268 1e-72 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 253 3e-68 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 243 3e-65 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 243 3e-65 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 241 1e-64 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 268 bits (684), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 151/316 (47%), Positives = 210/316 (66%) Query: 205 CLVIVGAIAGRVASASIGKSLVKAKAAMDRISSGDLTALLHVGRRDEIGDLLHAINACSQ 264 ++ V + G + + I +SL +A + I+ GDLT + DEIG L+ A+ ++ Sbjct: 195 AVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREIDTSSTDEIGHLMAAMAKMNR 254 Query: 265 GLARLVAEVRQGSNQITSVSQEIAAGNTDLSTRTESQVAWLAATASSTASLTETVKLNVE 324 L +VA VR G N + + S +IA GN DLS RTE Q + L TA++T LT TVK N E Sbjct: 255 NLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTVKQNAE 314 Query: 325 HTMAVDAHASDARRIAEVGGKSVARLVTTMNEIKSSSLRISDVISIVENIAAQTNLLALN 384 + + D AS A IA GG+ V ++VTTM EI+SSSL I+D+IS+++ IA QTN+LALN Sbjct: 315 NALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTNILALN 374 Query: 385 AAIEAARAGAEGRGFAVVAAEVRGLAQRCGSAAQEVKGLVEKAVVNVSNGEMLVGETGST 444 AA+EAARAG +GRGFAVVA EVR LAQR SAA+E+K L++ +V V NG LV G+T Sbjct: 375 AAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKVENGSQLVMSAGNT 434 Query: 445 MAEIIASINGVVAVTTEVNRASQHQRSGIEKVNDAVQKMDDMSQENAALLEQAATAAQHM 504 M +++ S+ V V TE++ AS+ Q GIE+VN A+ MD +QENAAL+E+A AAQ + Sbjct: 435 MQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSL 494 Query: 505 YDQALKLSGAVSIFKI 520 +QA +L AV++FK+ Sbjct: 495 QEQARQLERAVNVFKL 510 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 253 bits (645), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/287 (50%), Positives = 200/287 (69%) Query: 234 RISSGDLTALLHVGRRDEIGDLLHAINACSQGLARLVAEVRQGSNQITSVSQEIAAGNTD 293 R++SGDLTA + V RDE G LL A+ ++ L R+V+ VR+G+ I + S EIA GN D Sbjct: 230 RVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLD 289 Query: 294 LSTRTESQVAWLAATASSTASLTETVKLNVEHTMAVDAHASDARRIAEVGGKSVARLVTT 353 LS+RTE Q + L TASS LT TV+ N + + A A IA GG VAR+V T Sbjct: 290 LSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDT 349 Query: 354 MNEIKSSSLRISDVISIVENIAAQTNLLALNAAIEAARAGAEGRGFAVVAAEVRGLAQRC 413 M EI SS +I D+IS+++ IA QTN+LALNAA+EAARAG +GRGFAVVA+EVR LAQR Sbjct: 350 MEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 409 Query: 414 GSAAQEVKGLVEKAVVNVSNGEMLVGETGSTMAEIIASINGVVAVTTEVNRASQHQRSGI 473 +AA+E+K L+ +V V +G +LV E G TM EI+ S+ V + E++ A + QRSGI Sbjct: 410 AAAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGI 469 Query: 474 EKVNDAVQKMDDMSQENAALLEQAATAAQHMYDQALKLSGAVSIFKI 520 E+V+ AV +MD ++Q+NAAL+EQAA A+Q + +QA +L+ AVS+F++ Sbjct: 470 EQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRL 516 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 243 bits (620), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 153/345 (44%), Positives = 224/345 (64%), Gaps = 1/345 (0%) Query: 177 QSLFYEWTSRHPDSFLSNIGGTLAFSVTCLVIVGAIAGRVASASIGKSLVKAKAAMDRIS 236 +SL + + D+ S I L S + + IA + + SI + L +A + ++ Sbjct: 171 KSLMEQSVTEGRDTTQSAIAMMLGLSAVAIALC-VIAAWLVTRSITRPLNEAVSVASAVA 229 Query: 237 SGDLTALLHVGRRDEIGDLLHAINACSQGLARLVAEVRQGSNQITSVSQEIAAGNTDLST 296 +GDLT + +DE G LL A+ + + L R+V+EVRQGS+ I + S EIA GN DLS+ Sbjct: 230 AGDLTVQIGATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSS 289 Query: 297 RTESQVAWLAATASSTASLTETVKLNVEHTMAVDAHASDARRIAEVGGKSVARLVTTMNE 356 RTE Q L TAS+ LT TVK N ++ ++ A+ A +A GG V ++V TM E Sbjct: 290 RTEEQAGALEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGE 349 Query: 357 IKSSSLRISDVISIVENIAAQTNLLALNAAIEAARAGAEGRGFAVVAAEVRGLAQRCGSA 416 I +S +I D+IS+++ IA QTN+LALNAA+EAARAG +GRGFAVVA+EVR LAQR SA Sbjct: 350 INDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASA 409 Query: 417 AQEVKGLVEKAVVNVSNGEMLVGETGSTMAEIIASINGVVAVTTEVNRASQHQRSGIEKV 476 A+E+K L++ +V V NG LV + G+TM E++AS+ V V E++ AS Q GIE++ Sbjct: 410 AKEIKALIDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQI 469 Query: 477 NDAVQKMDDMSQENAALLEQAATAAQHMYDQALKLSGAVSIFKIA 521 N A+ +MD ++Q+NAAL+E+AA AAQ + +Q+ +LS VS+FK++ Sbjct: 470 NHAITQMDQVTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLS 514 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 243 bits (619), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 148/329 (44%), Positives = 214/329 (65%), Gaps = 5/329 (1%) Query: 197 GTLAFSVT--C---LVIVGAIAGRVASASIGKSLVKAKAAMDRISSGDLTALLHVGRRDE 251 G +A VT C V+ I G + + SI K L +A + +++GDLT + RDE Sbjct: 188 GAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDE 247 Query: 252 IGDLLHAINACSQGLARLVAEVRQGSNQITSVSQEIAAGNTDLSTRTESQVAWLAATASS 311 G L+ A+ + L +V+ VR+G+ IT+ S EIA+GN DLS RTE Q L TAS+ Sbjct: 248 TGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASA 307 Query: 312 TASLTETVKLNVEHTMAVDAHASDARRIAEVGGKSVARLVTTMNEIKSSSLRISDVISIV 371 +T TV+ N ++ + A A IA GG+ V R+V TM+EI SS +I D+I ++ Sbjct: 308 MEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVI 367 Query: 372 ENIAAQTNLLALNAAIEAARAGAEGRGFAVVAAEVRGLAQRCGSAAQEVKGLVEKAVVNV 431 + IA QTN+LALNAA+EAARAG +GRGFAVVA EVR LAQR +AA+E+K L+ +V V Sbjct: 368 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKV 427 Query: 432 SNGEMLVGETGSTMAEIIASINGVVAVTTEVNRASQHQRSGIEKVNDAVQKMDDMSQENA 491 G LV + G+TM ++++S+ V + E++ AS Q SGIE++N AV +MD+ +Q+NA Sbjct: 428 EGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNA 487 Query: 492 ALLEQAATAAQHMYDQALKLSGAVSIFKI 520 AL+EQAA AA+ M +QA++L+ ++SIFK+ Sbjct: 488 ALVEQAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 241 bits (615), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 152/316 (48%), Positives = 214/316 (67%), Gaps = 1/316 (0%) Query: 205 CLVIVGAIAGRVASASIGKSLVKAKAAMDRISSGDLTALLHVGRRDEIGDLLHAINACSQ 264 +VI +A VA A + + L +A A +R++ GDLT + DE G L+H++ A + Sbjct: 200 IVVIALGLAVMVARA-VSRPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMND 258 Query: 265 GLARLVAEVRQGSNQITSVSQEIAAGNTDLSTRTESQVAWLAATASSTASLTETVKLNVE 324 L ++V EVR G++ IT+ SQEIA GN DLS+RTE Q L TAS+ LT TVK N + Sbjct: 259 SLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNAD 318 Query: 325 HTMAVDAHASDARRIAEVGGKSVARLVTTMNEIKSSSLRISDVISIVENIAAQTNLLALN 384 + + A+ A IA GG V ++V TM I SS RI+D+IS+++ IA QTN+LALN Sbjct: 319 NARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQTNILALN 378 Query: 385 AAIEAARAGAEGRGFAVVAAEVRGLAQRCGSAAQEVKGLVEKAVVNVSNGEMLVGETGST 444 AA+EAARAG +GRGFAVVA+EVR LAQR SAA+E+K L++ +V V G LV G+T Sbjct: 379 AAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGAT 438 Query: 445 MAEIIASINGVVAVTTEVNRASQHQRSGIEKVNDAVQKMDDMSQENAALLEQAATAAQHM 504 M+E++AS+ V V E++ AS Q +GIE++N A+ +MD+++Q+NAAL+E+AA AAQ + Sbjct: 439 MSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNAALVEEAAAAAQSL 498 Query: 505 YDQALKLSGAVSIFKI 520 DQA +LS VS+FK+ Sbjct: 499 QDQAARLSQVVSVFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.130 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,266,730 Number of extensions: 47119 Number of successful extensions: 365 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 66 Length of query: 521 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 431 Effective length of database: 1,193,720 Effective search space: 514493320 Effective search space used: 514493320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)