BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0159.p (408 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 466 e-132 gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 459 e-130 gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 457 e-130 gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t... 404 e-114 gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC t... 102 4e-23 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust. Identities = 220/405 (54%), Positives = 295/405 (72%), Gaps = 7/405 (1%) Query: 4 FKLLKLAACIAGVFACTTQGMAQTNKISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAV 63 + L A IAG+F+ A ++S+ AV+IG +TDMS Y+++ G G + A RMAV Sbjct: 7 LRRLAAACAIAGIFSG-----AALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAV 61 Query: 64 EDFGGKVLGAPITVITADHQNKADIGASKAREWIDVEKVDMITDVITSSVALAVARVTND 123 DFGG VLG PI VI+ADHQNKADI A++AREW D +DM+ + S+ AL++ +V + Sbjct: 62 ADFGGTVLGKPIEVISADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAE 121 Query: 124 KKRVNMTVGAGTTRLTNEECSPYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFG 183 KKRV + +GAGT RLTNEEC+PY VHY YDT ALA GTA V +QGG +WFF+ ADY FG Sbjct: 122 KKRVYINIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAFG 181 Query: 184 TSLEKDASDVVVANGGKVLGSVRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLK 243 SL D S VV A+GG V+GS++HP +SD SSFLLQAQASKA+I+GLANAG D +N++K Sbjct: 182 HSLANDTSAVVKASGGTVVGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIK 241 Query: 244 GAREFGLAKGGQRFAGMLVNINDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKM 303 A+EFG+ K + G+L+ IND H +GL A+G+++T+ +YWD++E +RKF+ R+F KM Sbjct: 242 AAKEFGVTK-TMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKM 300 Query: 304 KQMPNMIHAGVYSAVTNYLKAIEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVH 363 K+MP+ A YSA T YLKA++A GTDD+ +VMA+LK T+I+DFY G IR DGR +H Sbjct: 301 KKMPSTHQAAAYSATTTYLKAVQAIGTDDSTKVMAQLKKTRIDDFY-NKGSIRADGRNIH 359 Query: 364 DMYLVEVKTPAESKYPWDYYRIKRTIPAAEAFIPLSKSKCQFVKK 408 DMYL +VK+PAESK PWDY ++ TIP +AF ++ SKC +K+ Sbjct: 360 DMYLYQVKSPAESKKPWDYLKLLETIPGEQAFTSVADSKCSLLKQ 404 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 459 bits (1180), Expect = e-130, Method: Compositional matrix adjust. Identities = 216/392 (55%), Positives = 291/392 (74%), Gaps = 3/392 (0%) Query: 18 ACTTQGMA--QTNKISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFGGKVLGAPI 75 AC G A + + + +KIG +TDMS Y++ GQG + A RMA+ D GG + G + Sbjct: 14 ACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGAINGKKV 73 Query: 76 TVITADHQNKADIGASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNMTVGAGT 135 ++ ADHQNKADI A+KAREW D + VDM+ + S+ +LA+ +V +KK+V ++VGAGT Sbjct: 74 ELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVGAGT 133 Query: 136 TRLTNEECSPYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKDASDVVV 195 TR TNEEC+ Y + YAYDT ALA GT +T+QGG +W+F+TADY FGTSLEKD S+VV Sbjct: 134 TRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTSEVVK 193 Query: 196 ANGGKVLGSVRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFGLAKGGQ 255 +NGG V+G+ R PL SDFSSFLLQAQ+SKA+I+GLA AG D+IN +K A EFG+ K Sbjct: 194 SNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVNK-TM 252 Query: 256 RFAGMLVNINDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMPNMIHAGVY 315 + AG+L+ INDTH++GL + QGM LT+G+YWD N++TR ++ RYF KMK+MP+M AG Sbjct: 253 KLAGLLIFINDTHSLGLSLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQAGDA 312 Query: 316 SAVTNYLKAIEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLVEVKTPAE 375 SAV YLKA++A G+ DAD+VM L+ +INDF+ +NGV+R DGRMVHDMYL+EVK P+E Sbjct: 313 SAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVKKPSE 372 Query: 376 SKYPWDYYRIKRTIPAAEAFIPLSKSKCQFVK 407 SK PWDYY++ +TIP +A++ ++SKC K Sbjct: 373 SKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 457 bits (1176), Expect = e-130, Method: Compositional matrix adjust. Identities = 214/375 (57%), Positives = 276/375 (73%), Gaps = 1/375 (0%) Query: 29 KISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFGGKVLGAPITVITADHQNKADI 88 +IS +KIG +TD+S VYS+ GQG A +MA+ D GG + G I ++ ADHQNKAD+ Sbjct: 25 QISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIADMGGAINGKKIELLVADHQNKADV 84 Query: 89 GASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNMTVGAGTTRLTNEECSPYMV 148 ASKAREW D + VDM+ S ALA A+V +KK+V M +GAG+ RLTNEECSPY V Sbjct: 85 AASKAREWFDQQGVDMLIGGTNSGTALASAKVAAEKKKVYMQIGAGSARLTNEECSPYTV 144 Query: 149 HYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKDASDVVVANGGKVLGSVRHP 208 HYAYDT ALA GT V +QGG +WFF+TADY FG SLE D ++VV A+GG V+G+V+HP Sbjct: 145 HYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLESDTANVVKASGGTVVGAVKHP 204 Query: 209 LNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFGLAKGGQRFAGMLVNINDTH 268 L ASDFSSFLLQAQ+SKA+IIGLANAG D IN++K A EFG+ K + AG+LV IND H Sbjct: 205 LGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAANEFGITKTA-KLAGLLVFINDVH 263 Query: 269 NMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMPNMIHAGVYSAVTNYLKAIEAT 328 ++ L +G+ LT+ +YWD NEETR F++RYFA K+MP+ + A YSA YLK ++ Sbjct: 264 SLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKKMPSSLQAADYSAALQYLKVVKEI 323 Query: 329 GTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLVEVKTPAESKYPWDYYRIKRT 388 GTDD+D+VMA L+ K ND Y NG +R DGR++HDMYL +VK +ESKYPWDYY++ +T Sbjct: 324 GTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVMHDMYLYQVKAQSESKYPWDYYKLVQT 383 Query: 389 IPAAEAFIPLSKSKC 403 IPA +A+ ++SKC Sbjct: 384 IPAEQAWTTKAESKC 398 >gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 404 bits (1039), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/400 (51%), Positives = 269/400 (67%), Gaps = 7/400 (1%) Query: 11 ACIAGVFACTTQGMAQTNKISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVED-FGGK 69 AC + A AQ VKIGVLTDMS YS GGQGS++AA+MAVED + Sbjct: 16 ACTVSLAATAIPAWAQDANT----VKIGVLTDMSGPYSAMGGQGSVVAAKMAVEDCLKNE 71 Query: 70 VLGAPITVITADHQNKADIGASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNM 129 G I +++AD+QNK D+G ++AREW+D +KV+ I D+ SSVALAV ++ DK + M Sbjct: 72 CKGMKIEILSADNQNKPDVGVTRAREWLDRDKVEAIADLTNSSVALAVQKLIKDKGGIAM 131 Query: 130 TVGAGTTRLTNEECSPYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKD 189 G T LT EC+P H+ +DTY+ A G A +T+ G +W+F+T DY FG SLEKD Sbjct: 132 YSGPATGALTTAECAPNGFHWMFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKD 191 Query: 190 ASDVVVANGGKVLGSVRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFG 249 ASDVV ANGG V+GSVRHPLNASDFSSFLLQAQASKA++IGLA+ G D++N +K AR F Sbjct: 192 ASDVVKANGGTVVGSVRHPLNASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFA 251 Query: 250 LAKGGQRFAGMLVNINDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQM-PN 308 + QR +LV ++D H +GL+ AQG++ T+GFYWD +E+TR FS+R+ ++ K + P Sbjct: 252 VGGKDQRLVALLVFLSDVHALGLEAAQGLVYTDGFYWDYDEQTRAFSKRFESQFKNIKPT 311 Query: 309 MIHAGVYSAVTNYLKAIEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLV 368 M+ AGVYS+V +LKA A T D V K++ I D N IR DGR++HDMYL Sbjct: 312 MVQAGVYSSVYQFLKARAAAKTSDWKVVAQKMREIPIADAVMRNASIRPDGRVIHDMYLY 371 Query: 369 EVKTPAESKYPWDYYRIKRTIPAAEAFIPLSKSKCQFVKK 408 +VKTPAESK PWDY ++ IPA +AF P+ + C VK+ Sbjct: 372 QVKTPAESKGPWDYLKLLSVIPAQQAFRPMD-AACPLVKQ 410 >gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 397 Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/376 (22%), Positives = 166/376 (44%), Gaps = 12/376 (3%) Query: 34 AVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFGGKVLGAPITVITADHQNKADIGASKA 93 ++ G MS ++ + G+ + + ++A++ +G KVLG + + D + K K Sbjct: 30 SIAFGCPVPMSGPFA-ANGKFADLGMKLALQKYG-KVLGKSTSYVNLDTEGKPATAVRKM 87 Query: 94 REWIDVEKVDMITDVITSSVALAVARVTNDKKRVNMTVGAGTTRLTNEECSPYMVHYAYD 153 +E I+ + I S ALA+ + + V +T AG +T +C+ ++ Sbjct: 88 QESIE-KGTRFFAGGILSGEALAMGKEADKAGAVFITT-AGADEITGSDCNRATFRWSVP 145 Query: 154 TYALANGTAKTVTQQ--GGDTWFFMTADYVFGTSLEKDASDVVVANGGKVLGSVRHPLNA 211 T+ T + + ++ W+ +T YVFG L A ++ G + +G+ H L Sbjct: 146 TFGAIEQTVRPLLEKMPNAKRWYTITPQYVFGEGLLSAAKNIFKEKGIEHVGNSYHSLTE 205 Query: 212 SDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFGLAKGGQRFAGMLVNINDTHNMG 271 +FS +L A A+K ++ L N G+ +TL+ A FG+ + +G Sbjct: 206 KEFSGYLTNAIAAKPDVLLLLNFGSQSSDTLRQAVSFGMKNNCTILMAWASGLEQFETLG 265 Query: 272 LDVAQGMLLTEGFYWDRNEE--TRKFSRRYFAKMKQMPNMIHAGVYSAVTNYLKAIEATG 329 D+ G+ YW + ++F + +K PN AG Y L AI Sbjct: 266 ADICDGVYFGAQ-YWHAIDAPFNKEFVKLVNDNLKIDPNYSLAGSYICTKIILDAIIKAN 324 Query: 330 TDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLVEVKTPAESKYPWDYYRIKRTI 389 + D V+A ++ K + + + D +++ + YL++ K A+ DY I + Sbjct: 325 STDPKAVIAAMEGMKYEGLTGSEEIRKGDHQVIKNYYLLKGKAKAKMANKNDYADI---V 381 Query: 390 PAAEAFIPLSKSKCQF 405 + ++F+PL K++C+ Sbjct: 382 SSGKSFLPLEKTQCKL 397 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,196,001 Number of extensions: 49376 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 8 Length of query: 408 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 321 Effective length of database: 1,207,925 Effective search space: 387743925 Effective search space used: 387743925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)