BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0158.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313304|ref|YP_003777396.1| MarR family transcription regul...    65   3e-12

>gi|300313304|ref|YP_003777396.1| MarR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%)

Query: 37  IDMKYLEGTIGYAIRRAQIAVFADLYKTIGEMSITPTQFSVLSLAADNPGLTQAYIATAL 96
           +D + L   +GY  RRA I +     K + +  + P  F+VLSL   NP + Q  ++ A+
Sbjct: 21  LDQQLLLSLVGYNCRRAYITIMPLFEKRMAKFELRPVDFTVLSLLKANPDINQKRLSKAI 80

Query: 97  GVERPRIVPIIDSLEKRRLAERVTSETDRRAREIHLTKEG 136
            V  P +  ++D LE+R L  R  +  DRR++ + LT  G
Sbjct: 81  NVSPPNLATLLDRLEQRGLVLRQRNPQDRRSQVLALTTAG 120


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 482,451
Number of extensions: 17464
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)