BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0155.p (386 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 293 2e-80 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 271 7e-74 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 252 4e-68 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 246 2e-66 gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [H... 236 2e-63 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 293 bits (750), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 160/390 (41%), Positives = 238/390 (61%), Gaps = 10/390 (2%) Query: 4 DIFIVSGARTPIGDFGESLKDFSPTKLGAIVTREAIRRAGIEAAEVEHSVFGTVIPTEAA 63 D+ IV+ RT IG FG +L + LGA V + + + GI+ + + G V+ T Sbjct: 3 DVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVL-TAGL 61 Query: 64 DLFLGRTAAIEAGIPDERPGLTLNRLCGSGAQSIVSAAQMMLLGEASITVAGGAESMSRA 123 R + I++G+PD P + ++CGSG +++ AAQ + G+A I +AGG E+MS + Sbjct: 62 GQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSAS 121 Query: 124 PFSISGMRFGTKMGNSVAYD-WLVNTLSDPFGHGQMGDTAENVAKYANIGRDRQDAYAAE 182 P ++ R G +MG++ D +V+ L D + MG TAENVAK I R+ QDA+AA Sbjct: 122 PHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAAA 181 Query: 183 SHRRAGHAIAEGRFREQIIPVEVKRRRETVLFDTDEHVRADTSIESLSKL--------XV 234 S +A A G+F+++I+P+E+K ++ETV+FDTDE V+ + ESL+ L V Sbjct: 182 SQNKAEAAQKAGKFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAESLATLRPAFDKAGTV 241 Query: 235 TAGNSSGINDGAAAVILMTGDEVTRRNITPLGRIVSWGHAGVPAEIMGIGPVKAVPVALA 294 TAGN+SGINDGAAAV++ + + L +I ++ AG+ IMG+GPV A + L Sbjct: 242 TAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVPASQLTLK 301 Query: 295 RAGLRISDLDVIESNEAFAVQALAVCDGLDLPMEKVNPNGGAVALGHPLGATGTILTIKA 354 +AG DLD++E NEAFA QA+AV + K+N NGGA+ALGHP+GA+G + + Sbjct: 302 KAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIALGHPIGASGCRVLVTL 361 Query: 355 LYELKRIGGRYGLVTMCIGGGQGIALVVER 384 L+E+ R + GL ++CIGGG G+AL VER Sbjct: 362 LHEMVRRDAKKGLASLCIGGGMGVALAVER 391 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 271 bits (693), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 161/399 (40%), Positives = 233/399 (58%), Gaps = 18/399 (4%) Query: 3 QDIFIVSGARTPIGDFGESLKDFSPTKLGAIVTREAIRR-AGIEAAEVEHSVFGTVIPTE 61 +D+FI RTPIG +G +LKD LGA+ R + R ++ V+ ++G Sbjct: 2 KDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQAG 61 Query: 62 AADLFLGRTAAIEAGIPDERPGLTLNRLCGSGAQSIVSAAQMMLLGEASITVAGGAESMS 121 + + R + + AG+P E PG T+NRLCGSG ++ +AA+ + GE + +AGG ESM+ Sbjct: 62 EDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMT 121 Query: 122 RAPFSISGM-----RFGTKMGNSVAYDWLVNTLSDPFGHGQMGDTAENVAKYANIGRDRQ 176 RAPF + R ++ + ++ + +G M +TAENVA + R Q Sbjct: 122 RAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRADQ 181 Query: 177 DAYAAESHRRAGHAIAEGRFREQIIPVEVKRRR-ETVLFDTDEHVRADTSIESLSKL--- 232 D +A S +A A A G ++I+PV + +++ + + DEH RA TS+E+L++L Sbjct: 182 DQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRA-TSMEALARLKGV 240 Query: 233 -----XVTAGNSSGINDGAAAVILMTGDEVTRRNITPLGRIVSWGHAGVPAEIMGIGPVK 287 VTAGN+SG+NDGA A++L + + V + + P RI+ AGV IMG+GP Sbjct: 241 VKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAP 300 Query: 288 AVPVALARAGLRISDLDVIESNEAFAVQALAVCDGLDLPME--KVNPNGGAVALGHPLGA 345 A LA+ G+ I +DVIE NEAFA Q LAV L + + +VNPNGGA+ALGHPLG Sbjct: 301 ASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGM 360 Query: 346 TGTILTIKALYELKRIGGRYGLVTMCIGGGQGIALVVER 384 +G L A Y+L+R GGRY L TMCIG GQGIA+V+ER Sbjct: 361 SGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIER 399 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 252 bits (643), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 160/398 (40%), Positives = 225/398 (56%), Gaps = 17/398 (4%) Query: 6 FIVSGARTPIGDFGESLKDFSPTKLGAIVTREAI-RRAGIEAAEVEHSVFGTVIPTEAAD 64 I RTP G +G +L L A R + R G++ + VE ++G + Sbjct: 4 LICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGEDN 63 Query: 65 LFLGRTAAIEAGIPDERPGLTLNRLCGSGAQSIVSAAQMMLLGEASITVAGGAESMSRAP 124 + R A + AG+P PG T+NRLCGS ++ AA+ + GE + +AGG ESM+RAP Sbjct: 64 RNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRAP 123 Query: 125 FSI-----SGMRFGTKMGNSVAYDWLVNTLSDPFGHGQMGDTAENVAKYANIGRDRQDAY 179 F + + R ++ + ++ + +G M +TAENVA I R QDA+ Sbjct: 124 FVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQDAF 183 Query: 180 AAESHRRAGHAIAEGRFREQIIPVEVKRRR-ETVLFDTDEHVRADTSIESLSKL------ 232 A S +R A A G F +I P+ + +++ + ++ TDEH R DT++ +L+KL Sbjct: 184 ALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGVVRP 243 Query: 233 --XVTAGNSSGINDGAAAVILMTGDEVTRRNITPLGRIVSWGHAGVPAEIMGIGPVKAVP 290 VTAGN+SG+NDGA A++L + + P R++ AGV IMG GP AV Sbjct: 244 DGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPAVR 303 Query: 291 VALARAGLRISDLDVIESNEAFAVQALAVCDGLDLPME--KVNPNGGAVALGHPLGATGT 348 LA+ GL ++ +DVIE NEAFA Q LAV L LP + VNPNGGA+A+GHPLGA+G Sbjct: 304 KVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGASGA 363 Query: 349 ILTIKALYELKRIGGRYGLVTMCIGGGQGIALVVERTA 386 L A+ +L+R GGRY L TMCIG GQGIALV+ER A Sbjct: 364 RLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERVA 401 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 246 bits (629), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 159/405 (39%), Positives = 222/405 (54%), Gaps = 36/405 (8%) Query: 3 QDIFIVSGARTPIGDFGESL-KDFSPTKLGAIVTREAIRRA-GIEAAEVEHSVFGTVIPT 60 QD +IV+ RTPIG + K+ P L + A+ + G++ +E ++ G P Sbjct: 6 QDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFPE 65 Query: 61 EAADLFLGRTAAIEAGIPDERPGLTLNRLCGSGAQSIVSAAQMMLLGEASITVAGGAESM 120 A L + R A + AG+P+ G+T+NR C SG +I AA + +GEA + +A GAESM Sbjct: 66 GAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAESM 125 Query: 121 SRAPFSISGMRFGTKMGNSVAYDWLVNTLSDP---FGHGQMGDTAENVAKYANIGRDRQD 177 S P M F + +N D +G MG TAE VA+ + R+ QD Sbjct: 126 SMVPM----MGFHPSIN--------INAFKDENVGMAYG-MGLTAEKVAQQWKVSREAQD 172 Query: 178 AYAAESHRRAGHAIAEGRFREQIIPVEVKRRR----------ETVLFDTDEHVRADTSIE 227 ++ SH++A A G F +++ E+ R +T DE RAD+++ Sbjct: 173 EFSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSNLA 232 Query: 228 SLSKL--------XVTAGNSSGINDGAAAVILMTGDEVTRRNITPLGRIVSWGHAGVPAE 279 +L+KL VTAGNSS +DGA A+I+++ + + N+TPL R VS+ GVP E Sbjct: 233 ALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPPE 292 Query: 280 IMGIGPVKAVPVALARAGLRISDLDVIESNEAFAVQALAVCDGLDLPMEKVNPNGGAVAL 339 IMGIGP +A+P AL GL +D IE NEAFA QALAV L L KVNP GGA+AL Sbjct: 293 IMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIAL 352 Query: 340 GHPLGATGTILTIKALYELKRIGGRYGLVTMCIGGGQGIALVVER 384 GHPLGATG I ++ L+R +YG+VTMC+G G G A + ER Sbjct: 353 GHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFER 397 >gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 236 bits (603), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 165/405 (40%), Positives = 221/405 (54%), Gaps = 28/405 (6%) Query: 3 QDIFIVSGARTPIGDFGESLKDFSPTKLGAIVTREAIRRAGIEAAEVEHSVFGTVIPTEA 62 +DI++V G RTP+ D+ S SPT +G V RE + R GI+ A++ V G + P +A Sbjct: 11 KDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGIDPADIGSVVAGNMAPGDA 70 Query: 63 ADLFLGRTAAIEAGIPDERPGLTLNRLCGSGAQSIVSAAQMMLLGEASITVAGGAESMSR 122 L R + AG+P P + + R+CG+G + I A + G + G+ESM+R Sbjct: 71 YQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTEAALIVGSESMTR 130 Query: 123 APFSISGMRFGTKMGNSVAY-DWLVNTLSDPFGHGQMGDTAENVAKYANIGRDRQDAYAA 181 P + G R G K+G V + D++ L DP M TAEN+AK I R D YAA Sbjct: 131 NPIAAFGHRSGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKKYGITRAEVDEYAA 190 Query: 182 ESHRRAGHAIAEGRFREQIIPVEVKRRRETVLFD--TDEHVR---------ADTS----- 225 S RA A A G +I+PV ET D D H++ ADT Sbjct: 191 YSFERALKAQAAGFHAGEIVPVV----NETFRLDGYNDRHIKLQGKLSEAAADTHPRPSP 246 Query: 226 IESLSKLXV-------TAGNSSGINDGAAAVILMTGDEVTRRNITPLGRIVSWGHAGVPA 278 +E L+KL T GNSS + D AAA I+ +GD V R + PL R+V+ AGVP Sbjct: 247 VEVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVVAAAVAGVPP 306 Query: 279 EIMGIGPVKAVPVALARAGLRISDLDVIESNEAFAVQALAVCDGLDLPMEKVNPNGGAVA 338 EIMGIGPV A+ L R GL ++D+ E NEA Q +AV L + E++N NGGA+A Sbjct: 307 EIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNVNGGAIA 366 Query: 339 LGHPLGATGTILTIKALYELKRIGGRYGLVTMCIGGGQGIALVVE 383 LGHPL ATG L+I A E+ R G RY + + CIGGGQGIAL++E Sbjct: 367 LGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLE 411 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,190,565 Number of extensions: 49762 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 6 Length of query: 386 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 299 Effective length of database: 1,207,925 Effective search space: 361169575 Effective search space used: 361169575 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)