BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0154.p
         (490 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309597|ref|YP_003773689.1| 3-hydroxyacyl-CoA dehydrogenase...   207   1e-54
gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase...   108   9e-25

>gi|300309597|ref|YP_003773689.1| 3-hydroxyacyl-CoA dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 805

 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 204/389 (52%), Gaps = 14/389 (3%)

Query: 5   IKKAVVIGAGSMGSGIAAHLANAGMNVVLMDIVPKEGGRSSVAENAIQ--RQLATGGFML 62
           +KK  V+GAG MG+ IAAH  NA + VVL D+  KEG ++ + + AI+  ++L+      
Sbjct: 16  VKKVAVLGAGVMGAQIAAHCINARVPVVLFDLPAKEGPKNGIVQRAIENLKKLSPAPLGN 75

Query: 63  PAYASLVRAANIEDDFADVADADWIVEAVIEDMAVKSNLYKSIEAVRKDDSIVSSNTSTI 122
              A+L++ AN EDD A +   D I+EA+ E M  K +LYK +       +I +SNTS +
Sbjct: 76  KDDAALIQVANYEDDLAVLEGCDLIIEAIAERMDWKHDLYKKVAPHIGPKAIFASNTSGL 135

Query: 123 PLSHLTEGLGKRFAGDFLITHFFNPPRYMRLLELVSGPETHRSTVMRTRRICDEVLGKTV 182
            ++ L+EG        F   HFFNPPRYM L+EL+    T    + +        LGK V
Sbjct: 136 SINALSEGFDAGLKARFCGVHFFNPPRYMHLVELIPTQSTEPHILDQLEAFLTTTLGKGV 195

Query: 183 IDCRDKPGFIANRIGNYWMSVATLEAIKHGLTVEEADAVMSRGFGVPKTGIFGLFDLVGI 242
           +   D P F+ANR+G + +    +EA K+GL+V+  D +     G  K+G F   D+VG+
Sbjct: 196 VRAFDTPNFVANRVGVFGILATIIEAEKYGLSVDVVDDLTGAKLGRAKSGTFRTADVVGL 255

Query: 243 NLVPLVWRSLLDILPKDDDHHHFDLTKNSFIGTMLEKGLIGRKGKGGFYRQTGKGKDRIR 302
           + +  V R++ D L   DD           +  ++E+G +G+K   GFY++   GKD +R
Sbjct: 256 DTMGHVIRTMQDNL--KDDPFFSSYATPPLLAKLVEQGALGQKSGAGFYKKV--GKDILR 311

Query: 303 ETIDLNSGEYRLEQSPTLDAL------DTAGKNLRKLCEHDSAAGRYTWSVLKHLVCYSS 356
             ID   G+Y    +   D +          K ++ L +  +  G++ W++ +    Y +
Sbjct: 312 --IDPAKGDYVPGGAKADDIIARILKEKDPVKRMKALHDSTNPQGQFLWAIFRDAFHYIA 369

Query: 357 EVAPSVADDVISVDTAMQRGYNWSEGPFQ 385
               SVAD+   +D AM+ G+ WS GPF+
Sbjct: 370 VHLESVADNARDLDFAMRWGFGWSVGPFE 398


>gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score =  108 bits (270), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 24/291 (8%)

Query: 10  VIGAGSMGSGIAAHLANAGMNVVLMDIVPKEGGRSSVAENAIQRQLATGGFMLPAYASLV 69
           VIG+G+MG+GIA   A AG  V+L D      G++  A      +L +   + PA A   
Sbjct: 18  VIGSGTMGAGIAQVAAVAGHPVLLYDSREGAAGKAIGAICTNLDKLVSKDKLTPALAQAA 77

Query: 70  -RAANIEDDFADVADADWIVEAVIEDMAVKSNLYKSIEAVRKDDSIVSSNTSTIPLSHLT 128
            +  ++     ++  AD ++EA++E +A K  L+  +EA+     I+++NTS++ ++ + 
Sbjct: 78  SQRISVAQSLEELHQADLVIEAIVEQLAAKHELFGKLEAIVSTRCILATNTSSLSITQIA 137

Query: 129 EGLG--KRFAGDFLITHFFNPPRYMRLLELVSGPETHRSTVMRTRRICDEVL--GKTVID 184
            GL   +R  G     HFFNP   M L+E++SG     S     + + D  L  GKT + 
Sbjct: 138 AGLQHPERVVG----MHFFNPVPMMALVEIISGLA---SDAALAQCLHDTALAWGKTPVM 190

Query: 185 CRDKPGFIANRIGNYWMSVATLEAIKHGLTVEEADAVMSRGFGVPKTGIFGLFDLVGINL 244
            R  PGFI NR+   + +       + G      DAVM    G  + G F L DL+G ++
Sbjct: 191 ARSTPGFIVNRLARPYYAEGLRMLHEGGAQPATIDAVMREAGGF-RMGPFELMDLIGHDV 249

Query: 245 VPLVWRSLLDILPKDDDHHHFD---LTKNSFIGTMLEKGLIGRKGKGGFYR 292
              V +S+         H +F+    T +     ++  G +GRK   GFYR
Sbjct: 250 NFAVTQSVF--------HAYFNDPRFTPSLIQQELVHAGYLGRKSGRGFYR 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,549,142
Number of extensions: 67439
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 2
Length of query: 490
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,198,455
Effective search space: 480580455
Effective search space used: 480580455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)