BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0153.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro...    62   7e-12

>gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis
           protein I [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score = 62.4 bits (150), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 6/68 (8%)

Query: 26  ALVEQASXVTQQNAALVEQASAAVGTLQDQAGRLNQAVGVFSLEDPALSGSARIVPLR-- 83
           AL++Q   VTQ NAALVEQASAAV TLQ+QA  LNQAVGVF LE P  S + R + ++  
Sbjct: 488 ALMDQ---VTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQSPTLRTINVKAA 544

Query: 84  -PLGGDAK 90
             L  DA+
Sbjct: 545 PALAMDAR 552


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 309,923
Number of extensions: 10666
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 7
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)