BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0151.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309597|ref|YP_003773689.1| 3-hydroxyacyl-CoA dehydrogenase...   125   3e-30
gi|300313422|ref|YP_003777514.1| enoyl-CoA hydratase/isomerase [...    63   2e-11
gi|300313175|ref|YP_003777267.1| enoyl-CoA hydratase [Herbaspiri...    60   1e-10

>gi|300309597|ref|YP_003773689.1| 3-hydroxyacyl-CoA dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 805

 Score =  125 bits (314), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 10  LEKFVIRGQRAFMQLKYAEAPVVAAAFGLTLGGGCELMMHCDVTLSHSELNAGFPELNVG 69
           +E  V + Q+A  +LKYA  PV+AA  GL LGGGCEL++H    +   E   G  E+ VG
Sbjct: 568 IEPVVHQLQQAHQRLKYASVPVIAAVAGLALGGGCELLLHTAKRVVSIESYIGLVEVGVG 627

Query: 70  IVPGWGGCTQLILR-----TGGDAASIERAFKSVVST-RISSSAAEAVELGVLRATDPII 123
           ++P  GG  +  +R      G D     + +    +T  +S SA EA +LG LR  D I+
Sbjct: 628 LIPAGGGLKEAAVRAAREAKGNDILPFLKEYMLAAATANVSKSALEARKLGYLREDDVIV 687

Query: 124 MNRDRLLAQAVQQARSLIELPYHAPASKSITLGGAKARNSLLAAVQPLRQSGALSDNDWA 183
            N   LL  A  +AR+L +  Y       + + G     +++A +  +R  G +S +D+ 
Sbjct: 688 FNPYELLHVAKVEARALFDAGYRPQLPPQVPVIGRNGLATIMAQLVNMRDGGFISAHDFK 747

Query: 184 IVSELATIFSGGESAEEVTLSEIDLSVLERTAFMRLASRPATLERMKHMLATGKPLRN 241
           +   +A   SGGE  E   ++E  L  +ER  FM L + P T ER+  M+ TGKP+RN
Sbjct: 748 LGKMIAETVSGGEVEEGSIVNEQWLLDIERKFFMELLNHPKTQERIMGMMQTGKPVRN 805


>gi|300313422|ref|YP_003777514.1| enoyl-CoA hydratase/isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 8/113 (7%)

Query: 30  PVVAAAFGLTLGGGCELMMHCDVTLSHSELNAGFPELNVGIVPGWGGCTQLILRTGGDAA 89
           P++AA  G  LG GCEL+MH D+ ++      G PE+NVG +PG GG TQ ++RT G   
Sbjct: 101 PILAAVNGYALGAGCELLMHADIAIAARGAKIGQPEINVGTLPGAGG-TQRLIRTVGKPL 159

Query: 90  SIERAFKSVVSTRISSSAAEAVELGVLR--ATDPIIMNRDRLLAQAVQQARSL 140
               A K V+S     SA +A++ G++     D   + R   LA ++ Q   L
Sbjct: 160 ----AMKMVLSGEF-ISADQALQAGLVAEVVDDDATLERTLALAHSIAQKSPL 207


>gi|300313175|ref|YP_003777267.1| enoyl-CoA hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 14  VIRGQ---RAFMQLKYAEAPVVAAAFGLTLGGGCELMMHCDVTLSHSELNAGFPELNVGI 70
           V +G+   R +  L+    PV+AA  G  LGGGCEL M CD  ++      G PE+ +GI
Sbjct: 78  VFKGEFITRNWETLRRIRKPVIAAVAGYALGGGCELAMMCDFIIAADNAKFGQPEIKLGI 137

Query: 71  VPGWGGCTQL 80
           VPG GG  +L
Sbjct: 138 VPGAGGTQRL 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 693,100
Number of extensions: 26284
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 3
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)