BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0148.p (279 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310676|ref|YP_003774768.1| outer membrane protein (porin) ... 132 2e-32 gi|300313395|ref|YP_003777487.1| porin transmembrane protein [He... 130 1e-31 gi|300310328|ref|YP_003774420.1| porin signal peptide protein [H... 108 3e-25 gi|300313813|ref|YP_003777905.1| transmembrane outer membrane po... 103 2e-23 gi|300311557|ref|YP_003775649.1| outer membrane porin [Herbaspir... 99 5e-22 >gi|300310676|ref|YP_003774768.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 120/223 (53%), Gaps = 23/223 (10%) Query: 26 CAHADDSMTIYGIINPGISIFNNI-----SGGRTTIMSDGVIQASRIGFKGSEDLGGGNA 80 AHA S++IYG+I+ G++ +++ G R M G+ Q SRIGFKG+EDLGGG Sbjct: 17 TAHAQSSVSIYGLIDLGLTYYSSAPKSGGGGARLLRMDSGIAQGSRIGFKGTEDLGGGMN 76 Query: 81 AIFQLETGFNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYSF------TYDNFVT 134 A F LETGF + +G+LGQGGLLFGRQ+ VG+ WGSL+VGRQY F Y Sbjct: 77 AFFTLETGFGADDGSLGQGGLLFGRQSFVGLGSTQWGSLSVGRQYDFMANIGGQYAMGAL 136 Query: 135 LINGVTTYNLYAFKMGDADGT-------AAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAG 187 G + L+A A GT A R NN++KY S K GF G M GE AG Sbjct: 137 SPAGSFGWGLHADA---AHGTALNNHIYAGDRTNNSIKYNSAKFGGFSFGAMVGLGETAG 193 Query: 188 SLSTQSSDSLGLTYGGEGFKLVSAYTVARDTRPAMSIGTTVFG 230 + + + S Y F AYT +D+ + S T ++G Sbjct: 194 NNNAGRTVSATGQYDNGPFSGALAYTDIKDSTGSFS--TRIYG 234 >gi|300313395|ref|YP_003777487.1| porin transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 110/192 (57%), Gaps = 5/192 (2%) Query: 29 ADDSMTIYGIINPGISIFNNISGGRTTIMSDGVIQASRIGFKGSEDLGGGNAAIFQLETG 88 A S+T+YG ++ G++ +N G T M+ G + AS++G G+EDLGGGN A+F+LE G Sbjct: 33 AQSSVTLYGTVDLGLAYSSNQGGASNTYMNSGALAASKLGLTGTEDLGGGNMALFRLENG 92 Query: 89 FNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYS--FTYDNFVTLINGVTTYNLYA 146 FN+ GA G+LF RQ+ VG++ KD+G +TVGRQY+ F Y + N +T Sbjct: 93 FNADTGAQSTAGVLFNRQSYVGLSSKDYGQVTVGRQYTPYFQYVGALGPTNVLT--GATG 150 Query: 147 FKMGDADG-TAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLSTQSSDSLGLTYGGEG 205 GD D R+NN++ Y P L G Q G + GEQAGS + SS S L Y + Sbjct: 151 AHPGDIDALDTTLRMNNSITYTLPTLGGLQAGVQYGMGEQAGSAANGSSVSAALRYDYQA 210 Query: 206 FKLVSAYTVARD 217 F + YT ++ Sbjct: 211 FSWSAGYTRLKN 222 >gi|300310328|ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 108 bits (271), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 102/186 (54%), Gaps = 16/186 (8%) Query: 26 CAHADDS-MTIYGIINPGISIFNNISG-----GRTTIMSDGVIQASRIGFKGSEDLGGGN 79 AHA S +TIYG I+ ++ N I+ G T + G+++ SR+G KGSEDLGGG Sbjct: 17 AAHAQSSSITIYGAIDASLTYTNKIATDGKNTGSLTAVESGLVKGSRLGIKGSEDLGGGL 76 Query: 80 AAIFQLETGFNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYSFTYDNFVTLINGV 139 A+F LE GFN G GQG L++GRQ VG++G ++G++ VGRQ ++ + I G+ Sbjct: 77 KAVFTLENGFNVDTGEAGQGKLMWGRQTTVGLSG-NFGTVLVGRQ-----NDPLNDIGGI 130 Query: 140 TTYNLYA----FKMGDADGTAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLSTQSSD 195 + + D T QRLNN+++Y SP NG ++ FGEQ G S Sbjct: 131 ASAGGFGVPGTVHSKGLDRTDGQRLNNSIRYNSPNFNGLSFSGIYGFGEQVGRAVGGRSI 190 Query: 196 SLGLTY 201 LG Y Sbjct: 191 GLGSQY 196 >gi|300313813|ref|YP_003777905.1| transmembrane outer membrane porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 114/235 (48%), Gaps = 25/235 (10%) Query: 26 CAHADDSMTIYGIINPGISIFNNIS---GGRTTIMSDGVIQASRIGFKGSEDLGGGNAAI 82 A S+TIYG+++ G+ NN G T M+ G SRIGF+G+EDLGGG A+ Sbjct: 18 SVQAQSSVTIYGLVDTGVEYLNNAGPNGAGSVTRMTSGATNTSRIGFRGTEDLGGGLKAL 77 Query: 83 FQLETGFNSKNGAL-GQGGLLFGRQALVGITGKDWGSLTVGRQYSFTYDNFVTLINGVTT 141 FQLE GF NG+ G LF RQ+ VG+ G +G + GR YS TYD F+ + + Sbjct: 78 FQLENGFKLDNGSFDGDANQLFNRQSTVGLEG-GFGRVVAGRSYSTTYD-FLGPFDPMGY 135 Query: 142 YNLYAF-----KMGDADGTAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLSTQSSDS 196 Y++ G+ ++N VKY + +G ++G M+ FGE AG + Sbjct: 136 SANYSWATTAGATGNRKDGMPTGVSNLVKYQG-EFSGVKIGAMYGFGEVAGETRNGAKYG 194 Query: 197 LGLTYGGEGFKLVSAYTVARDTRPAMSIGTTVFGQSVTQTTFDRIDTAALGAQVQ 251 +GL +G F +V+ Y + T T +DR +A L A Q Sbjct: 195 VGLGWGTGPFSVVATYDRNNSA-------------TATNTPYDRATSAHLAAGYQ 236 >gi|300311557|ref|YP_003775649.1| outer membrane porin [Herbaspirillum seropedicae SmR1] Length = 374 Score = 98.6 bits (244), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 96/178 (53%), Gaps = 5/178 (2%) Query: 26 CAHADDSMTIYGIINPGISIFNNIS--GGRTTIMSDGVIQASRIGFKGSEDLGGGNAAIF 83 A A ++TIYGI++ I +N + G M +G I SRIGFKG+EDLGGG A+F Sbjct: 18 AAFAQSNVTIYGIVDTSIHYLSNANAQGNSNVRMDNGAIANSRIGFKGTEDLGGGLKAMF 77 Query: 84 QLETGFNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYSFTYDNFVTLINGVTTYN 143 QLE GF+S GA+ QGG LFGRQ+ VG+ G +G + VGRQ + +D + +T N Sbjct: 78 QLENGFSSDTGAMQQGGSLFGRQSWVGLQGG-FGKVRVGRQNTPLFDLLADHFDPLTVGN 136 Query: 144 LYAFKMGDADGTAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLSTQSSDSLGLTY 201 YA + R N ++Y +FGE+AGS+ T S S L Y Sbjct: 137 -YASNSWLPAAASLVRSPNMLRY-DGDFGPVAASASWAFGEKAGSVRTGSQFSSALRY 192 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 883,614 Number of extensions: 38365 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 14 Length of query: 279 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 195 Effective length of database: 1,222,130 Effective search space: 238315350 Effective search space used: 238315350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)