BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0140.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309906|ref|YP_003773998.1| major facilitator superfamily p...    65   1e-11
gi|300313658|ref|YP_003777750.1| transport transmembrane protein...    56   8e-09

>gi|300309906|ref|YP_003773998.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 141/314 (44%), Gaps = 29/314 (9%)

Query: 31  DKNILVLMVAPIQKTYGVSDVEISFLIGAAFAIANIVVGIPAGWMADKWNRRVVIAAGVV 90
           D+ ++   + PI K + + D + + ++ +AF ++  ++ +  GW++D++  R+V+   VV
Sbjct: 27  DRIVMSTAIIPISKEFAL-DAQQAGMVLSAFYVSYALMQLMGGWLSDRYGSRIVVVMCVV 85

Query: 91  IWSLALSANAVAATFLGLVVARVIVGGAEALIPPSSYSLIRDGVDEDRRARALSIYTMAL 150
            WSL     ++A +F  L++ R + G  E    P+S   + +   +  RARA S     +
Sbjct: 86  AWSLFTGLTSMAWSFASLLLIRFLFGAGEGCFSPASSVTVAEVFPQQERARAKSFLISTV 145

Query: 151 MLGTGLSLVLGGPLLAAVHNAGWTYIPVLGHVTSWQFTLFLIGAVGLPLALTVFLNRDPG 210
            LG      +G  ++A         +  LG    W+ T  ++  VG+ +A  ++L    G
Sbjct: 146 FLGNA----VGSGMVALT-------VVYLG----WRGTFHILAFVGMIVAAILWLALRSG 190

Query: 211 RSAAAPAELAASNARASSL---PNYLWMNRAFFIPILLFVVANAIITFGMAAWLPAMAGR 267
            +A      A    +   L   P  L +   +F          +I+  GM +W+P+   +
Sbjct: 191 MAAQQARSAARPKNQLRELVKNPTALRLTAIWF--------CTSIVYIGMISWMPSFLLK 242

Query: 268 KFMLEMRTFGLSQGIIMLTAGPLGLWLAGIAMQKKNANNPLGRIISVGLVSSLAMAVMPT 327
            + +++   G++  I  L A  LG  + G  + K         ++   L  ++ +A+M +
Sbjct: 243 VYQIDLLHIGIASAIPYLLAF-LGTNVVGWLLDKHGKGREKYFMMGGALACAVFLALMIS 301

Query: 328 ALVLSTSLQWFWTI 341
             V+   L  +WT+
Sbjct: 302 TTVIEL-LVVYWTL 314


>gi|300313658|ref|YP_003777750.1| transport transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 404

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 16/185 (8%)

Query: 27  LAQLDKNILVLMVAPIQKTYGVSDVEISFLIGAAFAIANIVVGIPAGWMADKWNRRVVIA 86
           ++ +D+  +      I   + +   ++  L+ ++F +   ++ +P GW+AD++  R VI 
Sbjct: 24  VSYIDRAAITFAATQIASEFHLKPSDLGILL-SSFFLGYSLLQLPGGWLADRYGSRPVIV 82

Query: 87  AGVVIWSLALSANAVAATFLGLVVARVIVGGAEALIPPSSYSLIRDGVDEDRRARALSIY 146
             +++WSL      +A +   LV+ R I G  E   P +S   + +    D R +  S+ 
Sbjct: 83  ISILLWSLFTGVTGMAWSVTSLVMIRFIFGVGEGAFPAASVKGVAENFSRDERPKMSSLL 142

Query: 147 TMALMLGTGLSLVLGGPLLAAVHNAGWTYIPVLGHVTSWQFTLFLIGAVGLPLALTVFLN 206
             +  +G+ L+     PLL A         P++ H   W+     IG  G+  AL  +  
Sbjct: 143 MSSNYIGSMLA-----PLLIA---------PLILHY-GWRAVFHYIGIAGVVFALVYWFC 187

Query: 207 RDPGR 211
             P R
Sbjct: 188 VRPVR 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,384,249
Number of extensions: 58525
Number of successful extensions: 381
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 5
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)