BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0133.p
         (123 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone decarbox...   155   1e-39
gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321...   100   4e-23

>gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone
           decarboxylase domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 191

 Score =  155 bits (391), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 90/124 (72%), Gaps = 2/124 (1%)

Query: 1   LRLSELAILCTAAKWKSQAEWYIHYPIGVDAGLKPEALEDIRQDKVPKFENSDESLIWRF 60
           LRLSELAIL TAA W+SQAEW+IH PI V+AG+ P+  E IRQ   P F   DE +IW F
Sbjct: 66  LRLSELAILATAAAWQSQAEWHIHLPIAVEAGILPDVAEQIRQGATPDFPLEDERVIWNF 125

Query: 61  VDDLYEKKRVSDEIYREAVAGFGIKTVVNLVGLLGYYTLVAMSLNVFDVRADGQVE--LP 118
            ++LY  KRVS+  Y  AVA FG+  VVNLVGLLGYY LVAM+LN F +RA+GQ E  LP
Sbjct: 126 ANELYRDKRVSERTYAAAVAMFGLPVVVNLVGLLGYYALVAMTLNAFGMRAEGQGEGDLP 185

Query: 119 FPDT 122
           F +T
Sbjct: 186 FAET 189


>gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  100 bits (249), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 3   LSELAILCTAAKWKSQAEWYIHYPIGVDAGLKPEALEDIRQDKVPKFENSDESLIWRFVD 62
           LSEL IL TA +W    EWY+HYPI + AG+KPE    I   + P+  + +E++++ F  
Sbjct: 86  LSELVILITAREWTQDYEWYVHYPIAIKAGIKPEIAAAIADGRRPEGMSEEETIVYDFSI 145

Query: 63  DLYEKKRVSDEIYREAVAGFGIKTVVNLVGLLGYYTLVAMSLNVFDVRA--DGQVELPFP 120
           +L+  KRVSD+ +  A   FG K VV+L G+  YYTL+AM +N    +A  D +  + FP
Sbjct: 146 ELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYYTLLAMQMNAAQYQAPKDAKRLVRFP 205

Query: 121 D 121
           +
Sbjct: 206 E 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 399,742
Number of extensions: 14893
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 49
Effective length of database: 1,269,480
Effective search space: 62204520
Effective search space used: 62204520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)