BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0132.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309972|ref|YP_003774064.1| hypothetical protein Hsero_0637...   211   2e-56

>gi|300309972|ref|YP_003774064.1| hypothetical protein Hsero_0637
           [Herbaspirillum seropedicae SmR1]
          Length = 147

 Score =  211 bits (537), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 107/136 (78%)

Query: 22  ILQTKFMHVKPGDTQYVEGGLRDFFVYRDLGIAEATHGKVIAQLVRANAAPEAGTGWHVH 81
           + Q  F HV  GDT Y  GGLRDFF+YRDLGIA AT G+V+AQLV+AN AP+AGTGWH H
Sbjct: 10  LAQNTFSHVSEGDTPYETGGLRDFFLYRDLGIAAATGGQVVAQLVKANTAPQAGTGWHRH 69

Query: 82  AAEFHIVYMLKGWAKFMYEDQETLVSAGDCVHQAPGIRHFLFDYSPDMEYLEVVGPADFA 141
            A FHIV MLKGWA+FMYE + TLV AGDCVHQ PGI HFLFDYSPDMEYLE+V PADF 
Sbjct: 70  EANFHIVIMLKGWARFMYETEVTLVKAGDCVHQRPGIVHFLFDYSPDMEYLEIVSPADFK 129

Query: 142 SVGVEGPCTVPQPAPW 157
           ++ +  PC VP P PW
Sbjct: 130 TIAMPAPCEVPAPTPW 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 529,196
Number of extensions: 21294
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)