BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0129.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate hydratase/2...   126   2e-30
gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578...   100   2e-22

>gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate
           hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 35/242 (14%)

Query: 57  KSDAEVLPL--SSVRLLSPVANPGKVIAAPVNYQKHLKEVLDDPNLHHDNQINHIERAGL 114
           K D   LP+   + R+ + V N GK I   +NY  H  E          + +       +
Sbjct: 48  KLDLNTLPVVEGNPRIGACVGNIGKFICIGLNYADHAAE----------SNLPIPAEPVV 97

Query: 115 FLKATSSVVGASEGVALRKLDRRNDHEVELAVVIGKRAANVSRADALNYVAGYCIGLDIT 174
           F K TS+VVG ++ V + +  ++ D EVEL V+IGK  + +   DA+++VAGYC+  D++
Sbjct: 98  FNKWTSAVVGPNDNVKIPRGSKKTDWEVELGVIIGKGGSYIDEKDAMSHVAGYCVVNDVS 157

Query: 175 IRGPEERSFR----------KSPDTYTVFGPWLVTADEITEPGKLDFSIAVNGEIRQQSN 224
                ER ++          K  DT+   GPWLVT DE+ +P KL   + V+G+  Q  N
Sbjct: 158 -----EREYQIERGGTWDKGKGCDTFGPIGPWLVTRDEVADPQKLGMWLEVDGKRYQNGN 212

Query: 225 TADLILGVEQLIEFASGFYTLEPGDIIITGTPEGVA-SIKP-------GDKMLARMEGIG 276
           T+ +I  V  ++ + S F +L+PGD+I TGTP GV   +KP       G  +   ++G+G
Sbjct: 213 TSTMIFNVAHIVSYLSRFMSLQPGDVISTGTPPGVGMGVKPEAVYLRAGQTIRLGIDGLG 272

Query: 277 EM 278
           E 
Sbjct: 273 EQ 274


>gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 18/205 (8%)

Query: 86  NYQKHLKEVLDDPNLHHDNQINHIERAGLFLKATSSVVGASEGVALRKLDRRNDHEVELA 145
           NY  H +E+  DP+          E    F+K   +VV     V          HE+EL 
Sbjct: 32  NYAAHAREMGHDPDR---------EPPFFFMKPADAVVPTDSVVPYPVATSDYHHEIELV 82

Query: 146 VVIGKRAANVSRADALNYVAGYCIGLDITIRGPEERSFR--------KSPDTYTVFGPWL 197
           V + K   N+    AL  V GY +GLD+T R  + ++ +        K  D      P +
Sbjct: 83  VALAKGGRNIPVEQALELVFGYAVGLDMTRRDIQSQAKKLGRPWDMAKGFDQSAPCAP-I 141

Query: 198 VTADEITEPGKLDFSIAVNGEIRQQSNTADLILGVEQLIEFASGFYTLEPGDIIITGTPE 257
           V   +   P +    + VNGE+RQQ + ADLI  V + I + SG   L PGD+I TGTPE
Sbjct: 142 VPVAQAGHPDQGAVWLKVNGEVRQQGDLADLIWSVAETISYLSGLVELFPGDLIFTGTPE 201

Query: 258 GVASIKPGDKMLARMEGIGEMAVAV 282
           GV ++  GDK+   ++G+ ++ + +
Sbjct: 202 GVGAVVKGDKLQGHVDGLPDINITI 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 878,445
Number of extensions: 35153
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)