BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0123.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311759|ref|YP_003775851.1| short-chain alcohol dehydrogena...    70   2e-13
gi|300311727|ref|YP_003775819.1| dehydrogenase [Herbaspirillum s...    59   4e-10
gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s...    54   7e-09

>gi|300311759|ref|YP_003775851.1| short-chain alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 2/114 (1%)

Query: 11  LDVVVNNAGMLMAGLTEAFSAEQVARIIDTNAISWLRVNRVALPSMRRQGNGLLMYVGST 70
           +DV+VNNAG+   G  EA    QV  + +TN +  + + +  +P MR +G GL++ V S+
Sbjct: 69  VDVLVNNAGIGNLGALEAQPMAQVRELFETNTLGSIAMTQAFIPQMRARGQGLVINVTSS 128

Query: 71  TSQLHEPFIGPYVASKAAGDALAEIMGMEIRPFGIDSVILVPGAFTSGTEHFAE 124
            +    P +  Y ASKAA +A  E + +E+ P G+   +++PG   S    FAE
Sbjct: 129 VTLRALPLLAVYTASKAAINAFTESLALELAPLGVQVRLVLPG--RSPQTRFAE 180


>gi|300311727|ref|YP_003775819.1| dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 247

 Score = 58.5 bits (140), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%)

Query: 1   VDHILAAHHRLDVVVNNAGMLMAGLTEAFSAEQVARIIDTNAISWLRVNRVALPSMRRQG 60
           +   L A   +DV+VNNAG+ + G  EA     V  I +TN    + + +  +P  R +G
Sbjct: 59  IKQALEAAGPIDVLVNNAGIGLFGAFEATPMSTVREIFETNTFGVMAMCQAVIPQFRERG 118

Query: 61  NGLLMYVGSTTSQLHEPFIGPYVASKAAGDALAEIMGMEIRPFGIDSVILVPG 113
           +G+++ V S+ +    P +  Y ASK A +     +  E++  G+   ++ PG
Sbjct: 119 DGVIINVTSSATLAAFPLVAAYTASKTAIEGFTASLAHELKAVGVRVKLVEPG 171


>gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 249

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 4   ILAAHHRLDVVVNNAGMLMAGLTEAFSAEQVARIIDTNAISWLRVNRVALPSMRRQGNGL 63
           IL    R+D++VNNAG+     T   +     RI+D +    L +++  LP+MR Q NG 
Sbjct: 75  ILQQFGRIDILVNNAGITQPVKTLEITGADYDRILDVSLRGTLYMSQAVLPAMRAQQNGS 134

Query: 64  LMYVGSTTSQLHEPFIGP--YVASKAAGDALAEIMGMEIRPFGIDSVILVPG 113
           ++ + S ++Q     +G   Y A+KA    LA  M  E  P GI    + PG
Sbjct: 135 IICISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGIRVNSITPG 186


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 744,194
Number of extensions: 31541
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 3
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)