BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0120.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310449|ref|YP_003774541.1| 4-hydroxybenzoate transporter t...   112   4e-26
gi|300310481|ref|YP_003774573.1| major facilitator superfamily p...    81   1e-16
gi|300310645|ref|YP_003774737.1| major facilitator superfamily b...    66   5e-12

>gi|300310449|ref|YP_003774541.1| 4-hydroxybenzoate transporter
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score =  112 bits (280), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 8/196 (4%)

Query: 148 VSDQRKKG-SVKELFSQGFLGPTILLWIACFFNVLIIYFVISWIPSLLRTTELTRDAGVL 206
           V + + +G  V  LF  G  G T+LLW+  F N++ +YF+ +W+P+L+R    +    VL
Sbjct: 242 VKETKAEGMPVAALFRDGRAGVTVLLWLISFMNLINLYFLSNWLPTLIRDAGYSTSMAVL 301

Query: 207 AVTAFSFGGMIGSLAQGALMNRFGVRRFILMEF-VACL--CCFGALSAVSSNLIFSVALF 263
             T+   GG+IG+L+ G  + RFG  R +   F +ACL     G L+ V + L  +V   
Sbjct: 302 IGTSLQVGGVIGTLSLGRFIQRFGFTRVLGSCFLLACLSIALIGKLATVPALLFVAVI-- 359

Query: 264 GLLGFMVNGIQAGLNVFAIEKIYPLSIRATGIGWAGGIGRIGSMTGPLLGGLFLTFHLTI 323
            + GF + G Q  +N  A    YP ++R+TGIGWA GIGRIGS+ GP++GG  +    T 
Sbjct: 360 -VAGFCIVGGQPAVNALA-GTFYPTTLRSTGIGWALGIGRIGSVVGPVIGGQLIALQWTN 417

Query: 324 NQVYLMALLPVVAAAI 339
             ++L A +P + +A+
Sbjct: 418 ASLFLAAAVPALISAL 433


>gi|300310481|ref|YP_003774573.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 17/185 (9%)

Query: 144 GYSYVSDQ--RKKGSVKELFSQGFLGPTILLWIACFFNVLIIYFVISWIPSLLRTTELTR 201
           G++   +Q    +     LF+ G    T+ LW+A F N+L +Y   SW+P++L    L+ 
Sbjct: 237 GFADAREQAIETRAGFGALFASGQARDTMALWVAFFMNLLAVYSAFSWLPTMLAGEGLSP 296

Query: 202 DAGVLAVTAFSFGGMIGSLAQGALMNRFGVRRFILMEFVACLCCFGALSA--------VS 253
                 +TA++FGG+ G+L     + RFG R  +L      LCC  A ++        V+
Sbjct: 297 SVAGAGLTAYNFGGVFGALLCALFITRFGSRLPML------LCCLAATASALFLRSLDVA 350

Query: 254 SNLIFSVALFGLLGFMVNGIQAGLNVFAIEKIYPLSIRATGIGWAGGIGRIGSMTGPLLG 313
           S     V   GL G  VN +Q+ +       IYP  +RATG   A   GR+G++     G
Sbjct: 351 SQTTLLVVGIGLHGLFVNAVQSTMYALC-AYIYPTQVRATGTAAALAFGRLGAILSAFAG 409

Query: 314 GLFLT 318
            L +T
Sbjct: 410 ALVIT 414


>gi|300310645|ref|YP_003774737.1| major facilitator superfamily
           benzoate permease [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 104/193 (53%), Gaps = 3/193 (1%)

Query: 149 SDQRKKGS-VKELFSQGFLGPTILLWIACFFNVLIIYFVISWIPSLLRTTELTRDAGVLA 207
           +D +  G+ +  LF Q     T+++W++ F  +L++Y + SW+P L+ +   +  + +  
Sbjct: 233 ADVKGAGAPMLHLFKQDRAVGTLMIWVSFFCCLLMVYALGSWLPKLMASAGYSLGSSLSF 292

Query: 208 VTAFSFGGMIGSLAQGALMNRFGVRRFILMEFVACLCCFGALSAVSSNLIFSVALFGLLG 267
           + A +FGG++G++  G L +RF + + ++  F         L   S   +  + L  + G
Sbjct: 293 LLALNFGGVVGAIGGGWLGDRFTLPKVVVSFFTVGTVAIALLGFNSPTPVLYL-LIIVAG 351

Query: 268 FMVNGIQAGLNVFAIEKIYPLSIRATGIGWAGGIGRIGSMTGPLLGGLFLTFHLTINQVY 327
               G Q  L      + YPL+IR+TG+GWA G+GR G++ GPLLGG  +   L +   +
Sbjct: 352 ATTIGTQILLYA-NTAQFYPLAIRSTGLGWASGVGRSGAIVGPLLGGALMAAALPLKMNF 410

Query: 328 LMALLPVVAAAIA 340
           L+  +P + AA+A
Sbjct: 411 LVFAIPGLVAALA 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 873,040
Number of extensions: 29494
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 5
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)