BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0114.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 199 2e-52 gi|300310448|ref|YP_003774540.1| transcription regulator protein... 176 3e-45 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 171 6e-44 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 159 3e-40 gi|300310812|ref|YP_003774904.1| LysR family transcription regul... 148 6e-37 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 160/290 (55%), Gaps = 2/290 (0%) Query: 1 LLYIFDEIFKTRNVTKASENLDLPQSTVSIGLGKLRSHFNDRLFSRTSNGMEPTPRAQLA 60 LL I +F+ R+V+ A+ LD+ Q VS+ L KLRS D LF +T GM+PTPRA Sbjct: 8 LLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTPRAVSL 67 Query: 61 IQYVRGCIASLEGALASQAVFDPLDSQREFRICMTDISEVVLLPTLLNYLKQAGPGIKVD 120 I R + + + S F P + + F + ++DI E++LLP LL ++ P V Sbjct: 68 IGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAPHASVV 127 Query: 121 VSKISP-ETPKNLESGVVDLAVGFMPHLE-AGFYQQKLFDQNFICLVSREHPRIRNKLSR 178 ++P E LESG VDLA+G+ P L F+QQ+LF Q+F+CL+ HP K+S Sbjct: 128 TVTMAPAELVAALESGEVDLAIGYFPDLRNRNFFQQRLFSQDFVCLLRAGHPLPAQKISL 187 Query: 179 AMFINESHIQIKSSGTGHSIVDKTLAEEGIERQIVLQLPSFLGVARIVAETEYIVTVPSR 238 + HI +K+ G + ++ L I R++VL F+ + +VA ++ + TVP Sbjct: 188 EHYQAAGHIVVKAEGRDQPMCERFLLRRKIRRRVVLSTAHFMAIPLLVATSDLVATVPRA 247 Query: 239 YGIAMADHESIKMLQPPIVLPSFSVKQHWHERFHEDVSNRWIRQVMAKLF 288 +G + I++++P +P +KQHWH ++H+D N W+R + A LF Sbjct: 248 FGEFVVRFAGIRLVEPGFEMPMLDLKQHWHRKYHKDAGNAWLRGLAAALF 297 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 176 bits (445), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 4/293 (1%) Query: 1 LLYIFDEIFKTRNVTKASENLDLPQSTVSIGLGKLRSHFNDRLFSRTSNGMEPTPRAQLA 60 LL +F E+F+ R ++ + L L Q VS L +LR F D LF RT+ GM+PTP A+ Sbjct: 13 LLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQPTPFAEQL 72 Query: 61 IQYVRGCIASLEGALASQAVFDPLDSQREFRICMTDISEVVLLPTLLNYLKQAGPGIKVD 120 + V + + AL Q F P S R F I MTD+ EV +P L+ + PG+ + Sbjct: 73 AEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARCAPGVSIS 132 Query: 121 VSKISP-ETPKNLESGVVDLAVGFMPHLEAGFYQQKLFDQNFICLVSREHPRI---RNKL 176 + + +ESG VDLA+G +L YQ++LF Q ++ + H R ++ Sbjct: 133 TVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRIGHALDKPGRGEV 192 Query: 177 SRAMFINESHIQIKSSGTGHSIVDKTLAEEGIERQIVLQLPSFLGVARIVAETEYIVTVP 236 S F+ H+ + S + + +++ L + GI + ++P F V IV+ T +VTVP Sbjct: 193 SLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIVSSTALVVTVP 252 Query: 237 SRYGIAMADHESIKMLQPPIVLPSFSVKQHWHERFHEDVSNRWIRQVMAKLFS 289 + + A ++ ++PP+ LPS WH R+++D N W+R +++ F+ Sbjct: 253 RKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFISEHFA 305 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 171 bits (433), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 159/292 (54%), Gaps = 4/292 (1%) Query: 1 LLYIFDEIFKTRNVTKASENLDLPQSTVSIGLGKLRSHFNDRLFSRTSNGMEPTPRAQLA 60 LL +F I R++T A L L Q VS LG+LR F+D LF RT GM+PTP A Sbjct: 11 LLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQPTPAALEL 70 Query: 61 IQYVRGCIASLEGALASQAVFDPLDSQREFRICMTDISEVVLLPTLLNYLKQAGPGIKVD 120 + + + +++ AL FDP S R FR MTD++E++ LP L L P +++ Sbjct: 71 AKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQAPDVRLQ 130 Query: 121 VSKISP-ETPKNLESGVVDLAVGFMPHLEAGFYQQKLFDQNFICLV-SREHPRIRNKLSR 178 V ++ P + L +G +D A G +P L+ + LF + ++CL+ R+ R +L Sbjct: 131 VEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRDGLPQRAQLEL 190 Query: 179 AMFINESHIQIKSSGTGHSIVDKTLAEEGIERQIVLQLPSFLGVARIVAETEYIVTVPSR 238 F+ SH+ ++S+ + H V+ + + G++R+I L +P F + RI+ +++ + TVP+R Sbjct: 191 DEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDLVATVPAR 250 Query: 239 YG-IAMADHESIKM-LQPPIVLPSFSVKQHWHERFHEDVSNRWIRQVMAKLF 288 + ++H + + Q P+ +P V HWH+ F D N W+RQ++ L Sbjct: 251 IARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVIDLL 302 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 159 bits (401), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 151/293 (51%), Gaps = 13/293 (4%) Query: 1 LLYIFDEIFKTRNVTKASENLDLPQSTVSIGLGKLRSHFNDRLFSRTSNGMEPTPRAQLA 60 LL +FD + +N+T+A+ L + Q VS L +LR ND L RT++G++PTPRA+ Sbjct: 10 LLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPRAEEL 69 Query: 61 IQYVRGCIASLEGALASQAVFDPLDSQREFRICMTDISEVVLLPTLLNYLKQAGPGIKVD 120 VR ++ LE +A ++ FD +Q FR+ M D + + LP+L+ + + P IK+ Sbjct: 70 WPTVRRALSELEAVIAPES-FDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPRIKIR 128 Query: 121 VSKISPETPKN-LESGVVDLAVGFMPHLEAGFY-----------QQKLFDQNFICLVSRE 168 + ++ P+ L G +DLAVGF P + A +L+ ++C++ + Sbjct: 129 MMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQYVCVMHKS 188 Query: 169 HPRIRNKLSRAMFINESHIQIKSSGTGHSIVDKTLAEEGIERQIVLQLPSFLGVARIVAE 228 HP L+ + N H+ + SG H+++D LA ER+I+L + F RIVA Sbjct: 189 HPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFFTAGRIVAS 248 Query: 229 TEYIVTVPSRYGIAMADHESIKMLQPPIVLPSFSVKQHWHERFHEDVSNRWIR 281 +E I +P A E++ + + P P V WHER + +++W+R Sbjct: 249 SELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWLR 301 >gi|300310812|ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 148 bits (373), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 150/289 (51%), Gaps = 1/289 (0%) Query: 1 LLYIFDEIFKTRNVTKASENLDLPQSTVSIGLGKLRSHFNDRLFSRTSNGMEPTPRAQLA 60 LL F I++ R++T A+E L L Q VS L +LR F+D LF R+++ M PT A Sbjct: 13 LLKTFIVIWELRSLTAAAERLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTETAIRL 72 Query: 61 IQYVRGCIASLEGALASQAVFDPLDSQREFRICMTDISEVVLLPTLLNYLKQAGPGIKVD 120 + + + L+ AL + A FDP + R F + M+D+S +LP L+ L A P + ++ Sbjct: 73 HEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLPLLMEELAHAAPHVSIE 132 Query: 121 VSKISPET-PKNLESGVVDLAVGFMPHLEAGFYQQKLFDQNFICLVSREHPRIRNKLSRA 179 V +++ E + +G VDLA G++P L Q + ++IC++ REHP + L+ Sbjct: 133 VQQMAMENLGAAMRNGDVDLAFGYLPGLPEDCQSQLVLYDDYICMLRREHPLAQGPLTLE 192 Query: 180 MFINESHIQIKSSGTGHSIVDKTLAEEGIERQIVLQLPSFLGVARIVAETEYIVTVPSRY 239 + ++ ++ TGH + + L G++R + L++P F +IV T+ + +P Sbjct: 193 NLLQLRYVYTVTNTTGHQLAEDVLRNAGVKRDVALRMPHFTVAPQIVRITDLALFLPRSI 252 Query: 240 GIAMADHESIKMLQPPIVLPSFSVKQHWHERFHEDVSNRWIRQVMAKLF 288 + +L P+ +P V + H RF D +W+R ++ ++F Sbjct: 253 AERNNLDHAFVLLDLPLEMPRIPVSIYTHTRFSGDTGIQWLRSLLIEMF 301 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 834,698 Number of extensions: 32329 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 9 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)