BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0112.p (534 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 378 e-106 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 341 8e-95 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 326 3e-90 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 320 1e-88 gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 310 3e-85 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 378 bits (971), Expect = e-106, Method: Compositional matrix adjust. Identities = 234/529 (44%), Positives = 334/529 (63%), Gaps = 8/529 (1%) Query: 2 MPKKMTIGGKLLAAFAFILALLLMTTAIGIFRLSQTQAQIENIIGINNLKVKLTLAMRDT 61 M M +G +L FA+++ LL++ T GIF + Q Q + +++ + N + L M +T Sbjct: 1 MKSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET 60 Query: 62 VYERMIAIRTAALVGELSKMQIEVDRVATEEKKYTQIEQRLSTLRANSGD-SEQEKQLFN 120 V ER I++R L + IE + + KY Q+L L A S D S++EK Sbjct: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALP 120 Query: 121 VIKRYSELCTPLIKQSLEFSIAGQDSLAFNL---LTEQLIPLQSRWMQALTDLVAQEEKL 177 I + LI +++EF G+ A+ L L EQ +P+Q W L L A E++L Sbjct: 121 KIAAQASKAEKLINEAVEF---GKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQL 177 Query: 178 SEHAASNSEKTYRETLVWMLLLGALAFFGGGIVAITLTKHITKQLGGEPAYAVSVAERIA 237 ++ AA S Y + MLL+ A+ + A LT+H+ ++LGGEP YAV +A +IA Sbjct: 178 NKEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIA 237 Query: 238 AGDLATDINLRKSDDFSLLHAIKRMRGDLDNMIGIVRKDCEHIASSSIEIANGNLELSSR 297 GDLA I+ R D SL+ A++ MR L ++ VRK E I ++S EIA GNL+LS R Sbjct: 238 EGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGR 297 Query: 298 TEKQAVALEDAAASMDELSITVQKNSESAQQVNVMAISAAALAQQGGKVVSQVVETMGSI 357 TE+QA ALE+ A+SM++L+ TV++N+E+A Q N +A++A+ +A QGG +VSQVV+TM SI Sbjct: 298 TEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSI 357 Query: 358 SNSAAKIVDIIAVIDSIAFQTNILALNAAVEAARAGEQGSGFAVVATEVRNLAKRSSSAA 417 + S+ K+ DI++VID IAFQTNILALNAAVEAARAGEQG GFAVVA+EVR+LA+RS+SAA Sbjct: 358 NASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 417 Query: 418 KEIKSLINASAREITSGNDLAGVAGKTMQQIVESINNVVTIITEISTASRQQSEKLLHTN 477 KEIK LI S ++ +G+ L AG TM IV SI V ++TEI+ A+R+QS + N Sbjct: 418 KEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVN 477 Query: 478 EAVSRLDQMTQENVALVEIVATAAADLQERTKQVADVIGIFRL-ASNTH 525 EA+ ++D MTQ+N ALVE A AA LQE+ + ++ +FRL A+ H Sbjct: 478 EAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAH 526 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 341 bits (875), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 204/520 (39%), Positives = 337/520 (64%), Gaps = 9/520 (1%) Query: 5 KMTIGGKLLAAFAFILALLLMTTAIGIFRLSQTQAQIENIIGINNLKVKLTLAMRDTVYE 64 K+ + +L FA ++ LL++ + +G++ ++ + + +I+ NN + L M ++V Sbjct: 3 KLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVA-NNQQGGLADVMNNSVRI 61 Query: 65 RMIAIRTAALVGELSKMQIEVDRVATEEKKYTQIEQRLSTLRANSGDSEQEKQLFNVIKR 124 R +AIR AL E + + E++R+ +EK Y ++L + + +E +LF++I + Sbjct: 62 RALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFDLIAQ 121 Query: 125 YSELCTPLIKQSLEFSIAGQDSLA--FNLLTEQLIPLQSRWMQALTDLVAQEEKLSEHAA 182 + PL+ Q++ ++A QD A +LLT+++ P+Q++W+ L +L E++L+ A+ Sbjct: 122 NAADTEPLMNQAV--TLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQAS 179 Query: 183 SNSEKTYRE--TLVWMLLLGALAFFGGGIVAITLTKHITKQLGGEPAYAVSVAERIAAGD 240 + ++ TYR T W L+ G++ A + + + QLGGEPA A +A +IA G+ Sbjct: 180 AAADTTYRSILTTTWTLVAGSVLLAVAA--AFLIVRSVLHQLGGEPAQAQELAAQIAQGN 237 Query: 241 LATDINLRKSDDFSLLHAIKRMRGDLDNMIGIVRKDCEHIASSSIEIANGNLELSSRTEK 300 LA I L K D SL+ +++ MR L ++ ++ E I++++ +IA GNL+LS RTE+ Sbjct: 238 LAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEE 297 Query: 301 QAVALEDAAASMDELSITVQKNSESAQQVNVMAISAAALAQQGGKVVSQVVETMGSISNS 360 QA +LE+ A+SM+E++ TV++N+++A Q + +A SA+ AQ+GG+VV +VV TM IS S Sbjct: 298 QAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQS 357 Query: 361 AAKIVDIIAVIDSIAFQTNILALNAAVEAARAGEQGSGFAVVATEVRNLAKRSSSAAKEI 420 A KI +IIA ++ IAFQTNILALNAAVEAARAGEQG GFAVVATEVR+LA+RS+S+AKEI Sbjct: 358 AYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEI 417 Query: 421 KSLINASAREITSGNDLAGVAGKTMQQIVESINNVVTIITEISTASRQQSEKLLHTNEAV 480 + LI +S + + +G L AG TM ++V SI V +++EI+ AS +QS + N A+ Sbjct: 418 RGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAI 477 Query: 481 SRLDQMTQENVALVEIVATAAADLQERTKQVADVIGIFRL 520 S++D++TQ+N ALVE A+AA + ++ + D + +FR+ Sbjct: 478 SQMDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRI 517 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 326 bits (835), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 195/521 (37%), Positives = 320/521 (61%), Gaps = 9/521 (1%) Query: 11 KLLAAFAFILALLLMTTAIGIFRLSQTQAQIENIIGINNLKVKLTLAMRDTVYERMIAIR 70 +L F IL LL +A+G++ +++ + +I +NN ++KL A+R+ + +R +AIR Sbjct: 9 RLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQRALAIR 68 Query: 71 TAALVGELSKMQIEVDRVATEEKKYTQIEQRLSTL-RANSGDSEQEKQLFNVIKRYSELC 129 AL+ E + MQ+E +A +EK Y L + + +E+E+QL IK Sbjct: 69 NIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKNDEAAT 128 Query: 130 TPLIKQSLEFSIAGQDSLAFNLLTEQLIPLQSRWMQALTDLVAQEEKLSEHAASNSEKTY 189 PL+ ++++ + + + A +L Q+ P Q W+++LT+L E++L++ AA+++ TY Sbjct: 129 LPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAATSARNTY 188 Query: 190 RETLVWMLLLGALAFFGGGIVAIT----LTKHITKQLGGEPAYAVSVAERIAAGDLATDI 245 W+ ++ A +V + + + I +QLG EP+ A +VA IA+GDL + Sbjct: 189 ----AWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDLTATV 244 Query: 246 NLRKSDDFSLLHAIKRMRGDLDNMIGIVRKDCEHIASSSIEIANGNLELSSRTEKQAVAL 305 +R+ D SL+ +I++MR L+ + ++ E I+ +S +IA GN +LS RTE+QA +L Sbjct: 245 RVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAASL 304 Query: 306 EDAAASMDELSITVQKNSESAQQVNVMAISAAALAQQGGKVVSQVVETMGSISNSAAKIV 365 E+ AASM+EL+ TV++N++ A + ++ A A G + +VV+TM I+ S++K+ Sbjct: 305 EETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSKMS 364 Query: 366 DIIAVIDSIAFQTNILALNAAVEAARAGEQGSGFAVVATEVRNLAKRSSSAAKEIKSLIN 425 DII+VI+ IAFQTNILALNAAVEAARAGEQG GFAVVA+EVR+LA+RS+ AAKEIK LI Sbjct: 365 DIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKELIG 424 Query: 426 ASAREITSGNDLAGVAGKTMQQIVESINNVVTIITEISTASRQQSEKLLHTNEAVSRLDQ 485 S + +G+ L AG+ M QIV S+ I+ I+TA+++Q + N A+ ++DQ Sbjct: 425 ESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMVQMDQ 484 Query: 486 MTQENVALVEIVATAAADLQERTKQVADVIGIFRLASNTHL 526 +TQ+N ALVE + AA L ++ + V+ +F++ + L Sbjct: 485 VTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDRSL 525 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 320 bits (821), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 203/519 (39%), Positives = 321/519 (61%), Gaps = 7/519 (1%) Query: 2 MPKKMTIGGKLLAAFAFILALLLMTTAIGIFRLSQTQAQIENIIGINNLKVKLTLAMRDT 61 M K M IG KL F ++ L ++ + I + + + I+ ++ + + K+ A R+ Sbjct: 1 MFKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREA 60 Query: 62 VYERMIAIRTAALVGELSKMQIEVDRVATEEKKYTQIEQRLSTLRANSGDSEQEKQLFNV 121 + + IA R A + + Q E+ V +++ Y + + L L A G+ E EK + Sbjct: 61 LDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFA--GNKEFEKVRSGM 118 Query: 122 IKRYSELCTPLIKQSLEFSIAGQDSLAFNLLTEQLIPLQSRWMQALTDLVAQEEKLSEHA 181 ++ EL P + + +G+ + L + PL+ + + + ++AQ E + A Sbjct: 119 LQMAEELKRPRL-----YRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRA 173 Query: 182 ASNSEKTYRETLVWMLLLGALAFFGGGIVAITLTKHITKQLGGEPAYAVSVAERIAAGDL 241 ++K + + + +L + ++A+ LT+ + KQLGGEP YA +A++IA GDL Sbjct: 174 QDATDKMAQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDL 233 Query: 242 ATDINLRKSDDFSLLHAIKRMRGDLDNMIGIVRKDCEHIASSSIEIANGNLELSSRTEKQ 301 ++ + D+ SLL AIK MR L +++ VR+ I +S EIA+GNL+LSSRTE+Q Sbjct: 234 TANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQ 293 Query: 302 AVALEDAAASMDELSITVQKNSESAQQVNVMAISAAALAQQGGKVVSQVVETMGSISNSA 361 A +LE+ A++M+EL TV++N+++A+Q + +A+SA+ +A QGG+VV+QVV TM I+ S+ Sbjct: 294 ASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASS 353 Query: 362 AKIVDIIAVIDSIAFQTNILALNAAVEAARAGEQGSGFAVVATEVRNLAKRSSSAAKEIK 421 KIVDII+VID IAFQTNILALNAAVEAARAGEQG GFAVVA+EVR+LA+RS++AAKEI Sbjct: 354 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIT 413 Query: 422 SLINASAREITSGNDLAGVAGKTMQQIVESINNVVTIITEISTASRQQSEKLLHTNEAVS 481 LIN S +I G+ L AG+TM+ +V S+ V ++ EIS AS++QS + N A++ Sbjct: 414 ELINDSVSQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAIT 473 Query: 482 RLDQMTQENVALVEIVATAAADLQERTKQVADVIGIFRL 520 +D+ TQ+N ALVE A AA ++E+ ++ ++ FRL Sbjct: 474 HMDEATQQNSALVEEAAAAANSMKEQAGALSGLVATFRL 512 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 310 bits (793), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 195/523 (37%), Positives = 311/523 (59%), Gaps = 8/523 (1%) Query: 3 PKKMTIGGKLLAAFAFILALLLMTTAIGIFRLSQTQAQIENIIGINNLKVKLTLAMRDTV 62 P +++ +L +FA +LA++L+ T + I R++ + + NN+K + + R +V Sbjct: 8 PASLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGSV 67 Query: 63 YERMIAIRTAALVG--ELSKMQIEVDRVATEEKKYTQIEQRLSTLRANSGDSEQEKQLFN 120 ++R IA+R LVG EL + + ++ + Y + + L + A +E+ + Sbjct: 68 HDRAIALRDLTLVGDTELKDVSALISKL---DADYQRSAKLLDEMFAGMQVRPEERASLD 124 Query: 121 VIKRYSELCTPLIKQSLEFSIAGQDSLAFNLLTEQLIPLQSRWMQALTDLVAQEEKLSEH 180 IK PL + + +G A L+ Q P W+ A+ + EE +S+ Sbjct: 125 SIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQA 184 Query: 181 AASNSEKTYRETLVWMLLLGALAFFGGGIVAITLTKHITKQLGGEPAYAVSVAERIAAGD 240 ++ + RE +ML+L A A G ++A+ +T+ I LG EP +A + G+ Sbjct: 185 ESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDRGE 244 Query: 241 LATDINLR---KSDDFSLLHAIKRMRGDLDNMIGIVRKDCEHIASSSIEIANGNLELSSR 297 L L K+ S++ + M G+L + + VR + +A+ S +IA GN +L++R Sbjct: 245 LYHAAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRDLAAR 304 Query: 298 TEKQAVALEDAAASMDELSITVQKNSESAQQVNVMAISAAALAQQGGKVVSQVVETMGSI 357 TE QA +LE+ A++M++L+ TV++N A+Q N +A +A+ +A+QGG +V VV+TM +I Sbjct: 305 TEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAAI 364 Query: 358 SNSAAKIVDIIAVIDSIAFQTNILALNAAVEAARAGEQGSGFAVVATEVRNLAKRSSSAA 417 + S+ KIVDII VID IAFQTNILALNAAVEAARAGEQG GFAVVATEVRNLA+RS++AA Sbjct: 365 NVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAA 424 Query: 418 KEIKSLINASAREITSGNDLAGVAGKTMQQIVESINNVVTIITEISTASRQQSEKLLHTN 477 KE+K LI+ S + + +G L AG+TM+QIV S+ V ++ EIS+AS +QS + + Sbjct: 425 KEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGIEEVH 484 Query: 478 EAVSRLDQMTQENVALVEIVATAAADLQERTKQVADVIGIFRL 520 +A++ +DQ+TQ N ALVE + A A LQE+ + +G+F+L Sbjct: 485 KAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQL 527 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,121,898 Number of extensions: 35789 Number of successful extensions: 473 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 70 Length of query: 534 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 444 Effective length of database: 1,193,720 Effective search space: 530011680 Effective search space used: 530011680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)