BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0108.p
         (407 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310486|ref|YP_003774578.1| major facilitator superfamily p...    63   5e-11

>gi|300310486|ref|YP_003774578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 136/310 (43%), Gaps = 38/310 (12%)

Query: 2   KTIKDAASP-----WWLVGGAFLALAASTYPVIFFTFAIFLKPLAADLGWSRSVLSAALL 56
           +++ +A +P     W +VG  FL L  S    I  T ++ + PL  + GW+RS +S  + 
Sbjct: 6   QSLANAVTPRFHYAWVVVGVIFLVLLCSAG--IRATPSVMILPLEQEFGWNRSTISVVIS 63

Query: 57  VITVMTVVVSPLIGRLVDRIGVSYVVVPSIVVLSLAICSLGWVTDMYGYFLV---FTVIG 113
           V   +  ++ P     + R G+  VV+ + +VL  +  +L  +  M  + L+     V  
Sbjct: 64  VNIALYGLIGPFSAAAMQRFGIRRVVL-AALVLLASGTALSTLMHMPWHMLLSWGLLVGA 122

Query: 114 ISGVAHSPLSYSREIARRFIGNRGLALGLATAGIGIGGAVMPVLAQHLIANEGWRHTYQI 173
            +GVA + L  +  ++R F   RGLA+GL TA    G  V   L   ++ + GWR    +
Sbjct: 123 GTGVAANTLG-ATIVSRWFETRRGLAMGLLTASAATGQMVFLPLMAAMVGSYGWRSVAFL 181

Query: 174 LGGIVLIVGLGGFLVFRRGYGVPEKQEQKGALTAGEEPRIKLFG---------------- 217
           +  + L+     +L+      +PE     G    G+   IK  G                
Sbjct: 182 VSAVALLAIPLVWLL------LPESPAAIGQKMLGQTSEIKDEGLSRRNPLFIALDALRT 235

Query: 218 ---SPTFWLLAGAFFLMGTGVNGTI-SHLSAILTDQGAATQIAAIAQSVVGISMIAGRLM 273
               P FWLL  +FF+ G   NG I +   A+  D G     +A   + +G+  + G  +
Sbjct: 236 SVRMPDFWLLFASFFVCGLSTNGYIGTQFIAMCNDYGINEVSSASILAAMGMLDLVGTTL 295

Query: 274 CGFMFDRFTP 283
            G++ DR+ P
Sbjct: 296 SGWLSDRYNP 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.144    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,174,715
Number of extensions: 47211
Number of successful extensions: 308
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 4
Length of query: 407
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,207,925
Effective search space: 386536000
Effective search space used: 386536000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)