BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0103.p
         (534 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312822|ref|YP_003776914.1| hypothetical protein Hsero_3527...   100   3e-22
gi|300313227|ref|YP_003777319.1| hypothetical protein Hsero_3940...    92   9e-20

>gi|300312822|ref|YP_003776914.1| hypothetical protein Hsero_3527
           [Herbaspirillum seropedicae SmR1]
          Length = 563

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 159/359 (44%), Gaps = 68/359 (18%)

Query: 54  DDGDRNFGRG-----LISNRVDLLSELDVMYKDVGARISGAAWYDSVYTSRNDNNSPSTV 108
           D GD N+ RG      +    +LL  +    K +G R+S   W      +RN  N    +
Sbjct: 85  DQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLG-RVS---WLRDYSATRNTGN----I 136

Query: 109 NSVSSSGNSFTQ-ATRDLHGQKAELLDAFVFGKANIGETQESFRLGRHALIWGESLFFGA 167
           +  + +G S +  AT +LH  K  LLD +V    ++GE +   R+G   + WGESLF   
Sbjct: 137 SGGNPTGRSLSDDATNELH-SKVRLLDLWVSKSFDLGEERARIRVGNQVVNWGESLF--- 192

Query: 168 NGIAGGMA---PIDVVKAQSVPSTQFKELIRPVGQASGQIQLNPNVTVAGFYQYRWEKTR 224
             IAGG+     ID+++  S P TQ KE I P    +    L    +V  + Q  WE   
Sbjct: 193 --IAGGINQTNAIDIMRL-SNPGTQLKEAILPAPMVNFATGLGRGFSVETYVQQGWESNY 249

Query: 225 LPASGSYFSTGDI---LDAGGERILTGPSNAGTAFFRGADINARNSGQGGLSLKYTPEGS 281
            P  GSY+ST  +    +A G  + + P               R++GQ G++L+YTP G+
Sbjct: 250 FPPVGSYWSTATVGIGAEALGVPVTSRP---------------RSTGQYGVALRYTPPGA 294

Query: 282 GIDLGFYATRYHAKTPTVYL--RPGGFNPLTGQIGTYSLVYAEGIQAYGISASTTISSLN 339
            ++ G Y   YH K+P +     P G          YS  Y E  +  G+SA+  + +  
Sbjct: 295 DVNFGLYVMNYHDKSPVLSTANTPSGLG--------YS--YLEDRKMVGLSANFPLGNWA 344

Query: 340 LAGEISVRRNTPLVSPPLVAAATADNNSNAAYAVGNSA--------HAQVSGIYTLSPN 390
           +  E+S R   P      V+   +  N+N  + + N             V+G+ +LSP+
Sbjct: 345 IGTELSYRPKDP------VSLNGSVPNANGGFCMVNGKCYVEAEKYQLAVTGLLSLSPS 397


>gi|300313227|ref|YP_003777319.1| hypothetical protein Hsero_3940
           [Herbaspirillum seropedicae SmR1]
          Length = 581

 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 157/363 (43%), Gaps = 49/363 (13%)

Query: 43  PSGALVGRSNYDD-GDRNFGRG-----LISNRVDLLSELDVMYKDVGARISGAAWYDSVY 96
           P+G     S Y+D G+ N+ RG      +    +L+ +L   +K +G R+S   W     
Sbjct: 88  PAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTHELMLKLPDDFKFLG-RVS---WM---- 139

Query: 97  TSRNDNNSPSTVNSVSSSGNS-FTQATRDLHGQKAELLDAFVFGKANIGETQESFRLGRH 155
             R+   + ST   VS  G S F          K  LLD +V  + +IG+ +   R+G  
Sbjct: 140 --RDFAAATSTTGYVSGGGGSTFPGNASGQVSNKTRLLDLWVSKEFSIGDQRARLRVGNQ 197

Query: 156 ALIWGESLFFGANGIAGGMAPIDVVKAQ--SVPSTQFKELIRPVGQASGQIQLNPNVTVA 213
            + WGESLF     I GG+   + +     S P TQ KE + P    +    L    ++ 
Sbjct: 198 VVNWGESLF-----IPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVNFATGLGKGFSIE 252

Query: 214 GFYQYRWEKTRLPASGSYFSTGDILDAGGERILTGPSNAGTAFFRGADINARNSGQGGLS 273
            + Q  W++   P  GSY+S G I +   E  L  P+ +            R+SGQ G++
Sbjct: 253 TYLQQGWQRNYFPPVGSYWSIGTIGNGAPE--LGVPTTS----------TPRSSGQYGVA 300

Query: 274 LKYTPEGSGIDLGFYATRYHAKTPTVYLRPGGFNPLTGQIGTYSLVYAEGIQAYGISAST 333
           L+Y+P+ S ++ G Y   YH K+P +          T  +  +   Y +  +  G S + 
Sbjct: 301 LRYSPKDSEMNFGLYLMNYHDKSPVMSTS-------TSSLSGFGYSYLQDRKMIGASMNF 353

Query: 334 TISSLNLAGEISVRRNTPLVSPPLVAAATADNNSNAAYAVGN----SAHAQ--VSGIYTL 387
            + +  +  E+S R   P+      A  +   N     A GN    +A  Q  V+G+ ++
Sbjct: 354 PVGNWAVGTELSYRPKDPITLNTSTAGNSPTTNGTGCLANGNCYVETAKYQLAVTGLLSM 413

Query: 388 SPN 390
           +P+
Sbjct: 414 TPS 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,711,677
Number of extensions: 76855
Number of successful extensions: 218
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 2
Length of query: 534
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 444
Effective length of database: 1,193,720
Effective search space: 530011680
Effective search space used: 530011680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)