BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0102.p (455 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941... 244 9e-66 gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526... 234 1e-62 >gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941 [Herbaspirillum seropedicae SmR1] Length = 454 Score = 244 bits (624), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 161/417 (38%), Positives = 227/417 (54%), Gaps = 22/417 (5%) Query: 20 LPAGAVVSADEAAQ-LKTTLNPMGGEKAANKDGSIPAWSGGLTTATPGFVNGGKRADPFP 78 L GA ++ + Q L TTL P+GG+KAA + +P W PG+ G R D F Sbjct: 11 LAVGATLAHAASVQDLGTTLTPLGGDKAAGQ--GVPEWKAE-NVELPGWSYGKLRKDYFK 67 Query: 79 --GEKPVLTITSKNMDQYADKLTDGVKAMLKKYPETYRLDVYPTHRTAAAPQYVYDNIFK 136 EKP I + N+D+YAD LT G A++K+ + Y++D+YPTHR AAP +V +N K Sbjct: 68 YKDEKPTEVIDASNVDKYADHLTPGQVALIKQV-KGYKMDIYPTHRYCAAPDFVVENTKK 126 Query: 137 NATRAKL-VDGGSGPQPDGAFGGIPFPIPKSGLEVMWNHILRWRGEAWHWTTNRRQIY-- 193 N K+ DG S + + GIPFP+PK+GLEVM+N +R+RG + + Sbjct: 127 NVADGKIGADGWSLAEAN--VPGIPFPLPKTGLEVMYNSKMRYRGLGVDFPNTITAVSPR 184 Query: 194 -GDGKLVLTADSRVDLQMPYYFK-SGAPEKFDGIYFKIQVKNVGPAIRAGEAVTGRLNLD 251 G + + A ++ L P K S G+ F V P AG+A+T L+ Sbjct: 185 KGSNEWI-KASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAYSSPTALAGQALTVTTYLN 243 Query: 252 DSKSQSWVYLTGQRRVRLLPHACCDTPQPASAGVMNFDEQQVWTGGMQRFDWKLIGKKEI 311 ++++ Y GQRRVR +P D PQ DE V+ G M RFDWKL+GKKEI Sbjct: 244 RPGAETFYYFPGQRRVRRMPSYAYDAPQIGMENQYTMDEPTVFNGTMDRFDWKLVGKKEI 303 Query: 312 YIPYNT-NRSLAPAKDEELISAHHLNPNHVRWELHRVWVVEANVAAGQRHIAPKGRYYVD 370 YI YN+ + A +++ + N R+ELHRVWVVEA V G RH+APK +YVD Sbjct: 304 YIAYNSFGANNFKANFDDIAKPDFVAENARRYELHRVWVVEATVKPGVRHLAPKRTFYVD 363 Query: 371 EDSWNAVLADRWDAKGQLWK--TSFLLPIAMPDLPGTVDLT-FGFYDLLTGGGYVDN 424 EDSWN VL+D +DA+ +LWK +++P+ G DL+ F Y+L G +D+ Sbjct: 364 EDSWNLVLSDDYDAQNKLWKHREGYIIPVYE---TGACDLSGFAQYNLAEGRYLMDS 417 >gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526 [Herbaspirillum seropedicae SmR1] Length = 453 Score = 234 bits (597), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 150/377 (39%), Positives = 211/377 (55%), Gaps = 24/377 (6%) Query: 34 LKTTLNPMGGEKAANKDGSIPAWSGGLTTATPGFVNGGKRADPFP--GEKPVLTITSKNM 91 L +L P+GG+KA +P W T PG+ G R D F +K TI + N+ Sbjct: 26 LGASLTPLGGDKAGGN--GVPDWKDENVT-LPGWSYGKLRRDFFKYKDDKKSETIDASNV 82 Query: 92 DQYADKLTDGVKAMLKKYPETYRLDVYPTHRTAAAPQYVYDNIFKNATRAKL-VDGGSGP 150 D+YA KL+ G A++K+ + Y++DVYP+HR +AP +V DN KN T AKL DG S Sbjct: 83 DKYASKLSAGQIALIKQI-KGYKMDVYPSHRYCSAPDFVVDNTKKN-TSAKLGADGWS-- 138 Query: 151 QPDGAFGGIPFPIPKSGLEVMWNHILRWRGEAWHWTTNRRQIY--GDGKLVLTADSRVDL 208 + GIPFP+PKSG EVM+N +R+RG A W + + G + A S+ + Sbjct: 139 LAEAVVPGIPFPLPKSGEEVMYNSKMRYRGVAQEWKSTITAVSPRKGGSEWIKAGSQQTM 198 Query: 209 QMPYYFK-----SGAPEKFDGIYFKIQVKNVGPAIRAGEAVTGRLNLDDSKSQSWVYLTG 263 P+ K S P YF P AG+A++ L+ +++ Y G Sbjct: 199 FFPWAAKGSVNLSTLPPVEYYTYFAYN----SPTALAGQALSLTTFLNQPGGETFYYFPG 254 Query: 264 QRRVRLLPHACCDTPQPASAGVMNFDEQQVWTGGMQRFDWKLIGKKEIYIPYNT-NRSLA 322 QRRVR +P D+PQ DE V+ G + RFDWKL+GKKE+Y+PY + + Sbjct: 255 QRRVRRMPSYAYDSPQIGMENQYTLDEPMVFNGTIDRFDWKLVGKKEMYVPYGSFGATDF 314 Query: 323 PAKDEELISAHHLNPNHVRWELHRVWVVEANVAAGQRHIAPKGRYYVDEDSWNAVLADRW 382 AK E++ ++ N R+ELHRVWVVEA V AG RH+APK +YVDEDSWN V AD + Sbjct: 315 KAKFEDVAGEEYIAENARRYELHRVWVVEATVKAGVRHLAPKRTFYVDEDSWNLVAADDY 374 Query: 383 DAKGQLWK--TSFLLPI 397 DA+G+LWK ++++P+ Sbjct: 375 DAQGKLWKHREAYIIPV 391 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,687,160 Number of extensions: 79342 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 2 Length of query: 455 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 367 Effective length of database: 1,203,190 Effective search space: 441570730 Effective search space used: 441570730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)