BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0101.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum ...   117   1e-27
gi|300312824|ref|YP_003776916.1| plant photosystem II stability/...   113   2e-26

>gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 131/287 (45%), Gaps = 45/287 (15%)

Query: 1   VAVGERGVVLLSDDGGKAWAQA-TVPTSVTLTAVQFPNARNGWAVGHAGVILHSEDGGGS 59
           VAVG RG V+LSDDGG+ W QA  VP   TLTAV F + + GWAVGH GV++H+ DGG +
Sbjct: 54  VAVGARGEVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGET 113

Query: 60  WRKQLDGDQAAKLILEFSEKYALANAGSPVAKSLSSAARQFMADGADKPFLDVFFINDRS 119
           W+ Q                                      A   D+P   V+F +   
Sbjct: 114 WQLQRS------------------------------------ATDVDQPLFTVYFRDREH 137

Query: 120 GFVVGAFGLALKTEDGGATWQ----PFMQLLNNDEGSHLYSIKASGGRLVIAGERGFLAI 175
           G+  G + L L+TEDGG TW     P        + + L     SG  L +A E+G L  
Sbjct: 138 GWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFPGSGDTLYLAAEQGTLFR 197

Query: 176 SNDAGKSFLSPELPYKGSLFAASVL-PSGTIVVAGLKGNMFYADPGVLEFRKTQGGQNIS 234
           S DAG+ +       K SL++ +V  P+G ++VAGL G +  +  G  +++      + S
Sbjct: 198 STDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRSTDGGSQWQTVALPTSGS 257

Query: 235 YNATQVISDGRLIAMDQAGHLWISSDNGRSISLYSDFSPAPSLNSIL 281
               Q  + G L A    G +  S D G S  +   +S    L +IL
Sbjct: 258 ITRVQA-TPGLLTAASLEGKILQSRDEGVSWQVL--WSAPQGLTTIL 301


>gi|300312824|ref|YP_003776916.1| plant photosystem II
           stability/assembly factor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 126/269 (46%), Gaps = 44/269 (16%)

Query: 1   VAVGERGVVLLSDDGGKAWAQA-TVPTSVTLTAVQFPNARNGWAVGHAGVILHSEDGGGS 59
           VAVG  G ++LSDDGG ++ QA  VP   TLT+V F +A  GWA GH GVILH+ DGG +
Sbjct: 59  VAVGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADASQGWAAGHGGVILHTADGGKT 118

Query: 60  WRKQLDGDQAAKLILEFSEKYALANAGSPVAKSLSSAARQFMADGADKPFLDVFFINDRS 119
           W                    AL  + + V                D+P   ++F N   
Sbjct: 119 W--------------------ALQRSDTSV----------------DQPLFSIWFANANE 142

Query: 120 GFVVGAFGLALKTEDGGATWQ----PFMQLLNNDEGSHLYSIKASGGRLVIAGERGFLAI 175
           G+  G + L L T+DGG +WQ    P        + + L+      G L +A E+G L  
Sbjct: 143 GWAAGLWSLLLHTQDGGKSWQQVKLPAAPGQQRADLNLLHIFPGRDGALFVAAEQGVLYR 202

Query: 176 SNDAGKSFLSPELPYKGSLFAASVLPSGTIVVAGLKGNMFYADPGVLEFRKTQGGQNISY 235
           S D G+ + +     K SL++     SG IVV GL G +  +D G   ++        S 
Sbjct: 203 SRDGGQHWEALATGTKASLWSGVSTASGAIVVGGLGGKLLRSDDGGQHWQVI--ASPTSG 260

Query: 236 NATQVISDG-RLIAMDQAGHLWISSDNGR 263
           + T + S+G +++A   +G L  S D+GR
Sbjct: 261 SITALRSEGNQVMASSLSGALLASDDDGR 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,086,500
Number of extensions: 48844
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)