BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0096.p
         (278 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate hydratase/2...   296   8e-82
gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578...   102   4e-23

>gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate
           hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  296 bits (759), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 147/279 (52%), Positives = 189/279 (67%), Gaps = 1/279 (0%)

Query: 1   MKLLRYGPLGQEKVGALDKSGQVRDLSLLISELTPEWLAPQRLAALAAIDLEKMPLVIDQ 60
           MKLLRYGP+GQEK G LD++G++RDLS  I ++    L    L  +  +DL  +P+V   
Sbjct: 1   MKLLRYGPVGQEKPGILDQAGKIRDLSAHIKDVNGAVLDDASLEKIRKLDLNTLPVVEGN 60

Query: 61  PRFGIPFSGGRQFIAIGLNYRKHAEESGLPIPAEPVVFTKALTSMSGANDDIVMPEGSEE 120
           PR G       +FI IGLNY  HA ES LPIPAEPVVF K  +++ G ND++ +P GS++
Sbjct: 61  PRIGACVGNIGKFICIGLNYADHAAESNLPIPAEPVVFNKWTSAVVGPNDNVKIPRGSKK 120

Query: 121 LDWEVELGFVIGTLARKVTREKALEHVAGYVLANDISERHWQIKRNGQWGKGKSFDSFGP 180
            DWEVELG +IG     +  + A+ HVAGY + ND+SER +QI+R G W KGK  D+FGP
Sbjct: 121 TDWEVELGVIIGKGGSYIDEKDAMSHVAGYCVVNDVSEREYQIERGGTWDKGKGCDTFGP 180

Query: 181 IGPWLTTADEIPDPQILSMELSVNGVVKQSSNTADMIFPVAEIVSYLSQFMTLLPGDVVI 240
           IGPWL T DE+ DPQ L M L V+G   Q+ NT+ MIF VA IVSYLS+FM+L PGDV+ 
Sbjct: 181 IGPWLVTRDEVADPQKLGMWLEVDGKRYQNGNTSTMIFNVAHIVSYLSRFMSLQPGDVIS 240

Query: 241 TGTPAGVGLGMKP-AQFLKKGDVVSLRIDQLGSQTQLVV 278
           TGTP GVG+G+KP A +L+ G  + L ID LG Q Q  +
Sbjct: 241 TGTPPGVGMGVKPEAVYLRAGQTIRLGIDGLGEQEQKTI 279


>gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 12/204 (5%)

Query: 71  RQFIAIGLNYRKHAEESGL-PIPAEPVVFTKALTSMSGANDDIVMPEGSEELDWEVELGF 129
           R+   +G NY  HA E G  P    P  F K   ++   +  +  P  + +   E+EL  
Sbjct: 24  RRIYCVGRNYAAHAREMGHDPDREPPFFFMKPADAVVPTDSVVPYPVATSDYHHEIELVV 83

Query: 130 VIGTLARKVTREKALEHVAGYVLANDISER--HWQIKRNGQ-WGKGKSFDSFGPIGPWLT 186
            +    R +  E+ALE V GY +  D++ R    Q K+ G+ W   K FD   P  P + 
Sbjct: 84  ALAKGGRNIPVEQALELVFGYAVGLDMTRRDIQSQAKKLGRPWDMAKGFDQSAPCAPIVP 143

Query: 187 TADEIPDPQILSMELSVNGVVKQSSNTADMIFPVAEIVSYLSQFMTLLPGDVVITGTPAG 246
            A +   P   ++ L VNG V+Q  + AD+I+ VAE +SYLS  + L PGD++ TGTP G
Sbjct: 144 VA-QAGHPDQGAVWLKVNGEVRQQGDLADLIWSVAETISYLSGLVELFPGDLIFTGTPEG 202

Query: 247 VGLGMKPAQFLKKGDVVSLRIDQL 270
           VG        + KGD +   +D L
Sbjct: 203 VGA-------VVKGDKLQGHVDGL 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 946,022
Number of extensions: 42285
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 278
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,222,130
Effective search space: 237093220
Effective search space used: 237093220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)