BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0095.p
         (325 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310338|ref|YP_003774430.1| glyoxalase II protein [Herbaspi...    66   5e-12

>gi|300310338|ref|YP_003774430.1| glyoxalase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 167 PNRLSHILTFTADVDAAARFYIDVLGLRLSDRSGSIIAFMHGAHGSDHHLIALAGGG--G 224
           P  LSH++ F  D   A  FY   LG   +DR   +  F+  A   DHH + +       
Sbjct: 147 PRTLSHVVYFVPDAAKAEAFY-HRLGFVCTDRFTGVGPFLRPAGTLDHHTLFMIQTPPFM 205

Query: 225 PGLHHSSWDVTSFDDVGLGSQQMAVAGYERGWGLGRHVLGSNYFRYVRDPWGSYCEYSFD 284
            G  H ++ +    ++ L   +    GY+  WG GRH  GSN+F Y   P G + EY  D
Sbjct: 206 KGCEHFTFHMGGPTELLLAGTRFVEKGYQSFWGPGRHRFGSNWFWYFNSPLGCHVEYDAD 265

Query: 285 IDHIAADSDWPAGDYP 300
           +D    D  W A + P
Sbjct: 266 MD--LHDQSWAAREVP 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,114,801
Number of extensions: 48875
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 240
Effective length of database: 1,217,395
Effective search space: 292174800
Effective search space used: 292174800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)