BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0075.p
         (301 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311462|ref|YP_003775554.1| uracil-DNA glycosylase [Herbasp...   407   e-115

>gi|300311462|ref|YP_003775554.1| uracil-DNA glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 340

 Score =  407 bits (1047), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/330 (65%), Positives = 247/330 (74%), Gaps = 36/330 (10%)

Query: 2   SQNTFAASARVLEEIGVGPVWVRRHLAVETAEAEA----AATPVAA-----APVPAPQRA 52
            +N F +S  +L+ +G+GPVWVRR LAVE  + +A    +ATP+AA       V  P RA
Sbjct: 7   QENGFGSSLALLDALGIGPVWVRRELAVEEVQEQAQQPASATPIAAPVEAVGAVEQPSRA 66

Query: 53  -AQPAARPAPA---PA------------------PAPAQDDGLPP-WLNEMSDADMAPPG 89
             +PA  P P    PA                   AP Q++G PP WL+EM  A    P 
Sbjct: 67  PVEPAREPTPVAERPAVQAPPAGAPKAPAAPVPRSAPVQEEGGPPAWLDEMDFAASLEPV 126

Query: 90  FMPNDDEDDEPVIRINPAIA---TMDWAKLKETVAECRQCGLCNGRKKTVFGVGDEKAKW 146
            +P + EDDEP+  ++P IA    MDW +LKE VA+CR+CGLC GRKKTVFGVGDEKAKW
Sbjct: 127 LIP-EGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEKAKW 185

Query: 147 LFIGEGPGRNEDMQGEPFVGPAGKLLDNMLVAMGLKRGENAYIANIVKCRPTDEAGKDRP 206
           LFIGEGPGRNED+QGEPFVGPAGKLLDNMLV+MG+KRG+NAYIANIVKCRPTDE G+DRP
Sbjct: 186 LFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRPTDENGRDRP 245

Query: 207 PSAQEVASCLPYLQRQIALIQPTVLVALGKTAALSLLGLDPATPVSKLRGTVHRYQGLPL 266
           PS QEVASCLPYLQRQI LIQPTVLVALGKTAA+SLLGLDP TPV++LRGTVHRYQ LPL
Sbjct: 246 PSPQEVASCLPYLQRQIELIQPTVLVALGKTAAISLLGLDPTTPVARLRGTVHRYQELPL 305

Query: 267 VVTYHPAYLLRQLGDKSKAWADLCLAMTTY 296
           VVTYHPAYLLR L DKSK WADLCLAM+TY
Sbjct: 306 VVTYHPAYLLRSLQDKSKTWADLCLAMSTY 335


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 889,292
Number of extensions: 35258
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 216
Effective length of database: 1,217,395
Effective search space: 262957320
Effective search space used: 262957320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)