BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0074.p
         (336 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311463|ref|YP_003775555.1| hypothetical protein Hsero_2148...   310   8e-86

>gi|300311463|ref|YP_003775555.1| hypothetical protein Hsero_2148
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  310 bits (795), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 179/336 (53%), Positives = 215/336 (63%), Gaps = 16/336 (4%)

Query: 14  SSFQQQFHRRWSSLRDPHVRALAWLLDAPGLLDAQASRWNGRIAALGALSEMDITWLQAL 73
           SS Q +FH+RW  LRDPHVRALAWLL AP LL   A  W  RIA LG ++     WL  L
Sbjct: 13  SSHQVRFHQRWPELRDPHVRALAWLLYAPDLLAQDAPCWECRIATLGPVAPEVAGWLHDL 72

Query: 74  DKNP---RELYLLINAQPSARLGRYAEKLLTFYLQQTGRLIAHNVQVRN-GP-NDTIGEF 128
           + +P     L+  +  QP+ARLGRYAE+LLTFYLQQ   L+A N+QVR  GP ++T+GEF
Sbjct: 73  EHDPGLNAALHAHLARQPTARLGRYAEQLLTFYLQQQDWLVAANLQVRQQGPTHETLGEF 132

Query: 129 DFLVHDEASDDARSGAVHWEFATKFYLLESHHDQMQADA---FVGPNLADSLGAKMDKIM 185
           DFLV     D+   G +HWEFATKFYLL              FVGPNLAD+LG KM KIM
Sbjct: 133 DFLVRPPGDDEL--GLIHWEFATKFYLLAPQSAADAKANAGAFVGPNLADTLGKKMRKIM 190

Query: 186 QQQLMLSAHPAAAQYLPQPVTRALALVKGWLFYGETTEAASLPAALGISAQHCRGFWCEL 245
           QQQLMLSAHPAAA  LP PV  A ALVKGWLFY    EA  LPA+LG++A HCRGFWC+L
Sbjct: 191 QQQLMLSAHPAAASVLPAPVVAARALVKGWLFY-RHGEAVELPASLGVAADHCRGFWCDL 249

Query: 246 SALDVSD--DERYLVLPRLEWLAPARALAGKTLSGAQLRETVQLLFKETLAPVMIAVCDM 303
             L      D+ YL+LPRL WLAPARA   + LS   L+  ++  F    +PVM+A C +
Sbjct: 250 PRLAAQHQPDDLYLILPRLAWLAPARAPLAQGLSLPALQAALETAFLADQSPVMVAQCRI 309

Query: 304 EGDVA---LERRRGFLVPDDWRSKAAQRVQHAVVQI 336
                   LE  RGF+VP  W  +AA   +HA+V+I
Sbjct: 310 AKGAEPELLELARGFIVPPGWEQRAADTARHALVRI 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,409
Number of extensions: 45439
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,212,660
Effective search space: 303165000
Effective search space used: 303165000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)