BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0073.p
         (422 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311464|ref|YP_003775556.1| major facilitator superfamily p...   746   0.0  
gi|300312599|ref|YP_003776691.1| major facilitator superfamily p...    64   3e-11

>gi|300311464|ref|YP_003775556.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/420 (88%), Positives = 398/420 (94%)

Query: 1   MNRGFYTIMAAQFFSSLADNALLIAAIALLSEMHSPAWMTPLLKLFFVLSYVLLAAFVGA 60
           MNRGFYTIMAAQFFSSLADNALLIAAIALL+EMHSPAWMTPLLKLFFVLSYVLLAAFVGA
Sbjct: 1   MNRGFYTIMAAQFFSSLADNALLIAAIALLAEMHSPAWMTPLLKLFFVLSYVLLAAFVGA 60

Query: 61  FADAFPKGKVMFITNLIKVVGCALMFFTVHPLIAYAVVGFGAAAYSPAKYGILTELLPPE 120
           FADAFPKGKVM ITN+IK+VGC+LMFFTVHPL+AYAVVGFGAAAYSPAKYGILTELLPPE
Sbjct: 61  FADAFPKGKVMLITNMIKIVGCSLMFFTVHPLLAYAVVGFGAAAYSPAKYGILTELLPPE 120

Query: 121 KLVAANGWIEGLTVGSIIFGTVLGGALVNPHIASALLNFDFPVFDFGINTPTEAALCIIT 180
           KLVAANGWIEGLTVGSII GTVLGGALVNP I+S +L+FDFP+ D  I+TPTEAALCII+
Sbjct: 121 KLVAANGWIEGLTVGSIIMGTVLGGALVNPKISSVILSFDFPLVDLPIDTPTEAALCIIS 180

Query: 181 VIYVAAAIFNLNIPDTGARYAHQQRNPIKLIADFGNCFSTLWKDKLGQISLAVTTLFWGA 240
           +IYV AA+FN NIPDTGARY HQ+RNPI+LI DF  CF+TLWKDKLGQISLAVTTLFWGA
Sbjct: 181 LIYVIAALFNFNIPDTGARYEHQERNPIRLIVDFAGCFTTLWKDKLGQISLAVTTLFWGA 240

Query: 241 GATLQFIVLKWAEKSLHMPLDKAAILQGVVALGVALGAVGAARFVPLKKSLSVMPLGIVM 300
           GATLQFIVLKWAEKSLHMPLDKAAILQG+VA+GVALGA+ AARFVPLKKSL+VMPLGIVM
Sbjct: 241 GATLQFIVLKWAEKSLHMPLDKAAILQGIVAVGVALGAMAAARFVPLKKSLTVMPLGIVM 300

Query: 301 GLVVMAMTMVTSVWVAYPLLIIIGALSGYFVVPMNALLQHRGHVLMSAGHSIAVQNFNEN 360
           G+VVM MT  TSVWVAYPLL+I+GALSGYFVVPMNALLQHRGHVLMSAGHSIAVQNFNEN
Sbjct: 301 GIVVMLMTTTTSVWVAYPLLVIVGALSGYFVVPMNALLQHRGHVLMSAGHSIAVQNFNEN 360

Query: 361 LSVLTMLVLYAVMVRLNLDVNIVILIFGVFVASIMYLIMRRHAANQREHDSLALIGEHKH 420
           LSVLTMLVLYA MVR+NLDVN VI+IFG FVA IMYLIMRRHAANQREHDSLALIGE KH
Sbjct: 361 LSVLTMLVLYAFMVRMNLDVNTVIIIFGSFVAGIMYLIMRRHAANQREHDSLALIGEDKH 420


>gi|300312599|ref|YP_003776691.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 150/383 (39%), Gaps = 72/383 (18%)

Query: 2   NRGFYTIMAAQFFSSLADNALLIAAIALLSEMH------SPAWMTPLLKLFFVLSYVLLA 55
            R F      QF  +L DN    A + +L+          P  +  L+   F+L + L +
Sbjct: 12  QRRFAPFFWTQFLGALNDNVFKTALLTILTYDALSWTDLDPGLLNNLIPGLFILPFFLFS 71

Query: 56  AFVGAFADAFPKGKVMFITNLIKV--VGCALMFFTVHPL--IAYAVVGFG--AAAYSPAK 109
           A  G  AD   KG+V     L+++  +G A   +  H L  +  AV+G G  +  + P K
Sbjct: 72  ATSGQLADKLEKGRVARFVKLLEIAIMGIAAYGWMTHHLWLLVAAVIGMGVHSTLFGPVK 131

Query: 110 YGILTELLPPEKLVAANGWIEGLTVGSIIFGTVLGGALV--NP---HIASALLNFDFPVF 164
           Y  L + L  E+L+  NG IE  T   I+ G +LG  LV   P   H+ + +        
Sbjct: 132 YAYLPQQLRREELIGGNGLIEMGTFVGILLGEILGAVLVVHKPWGLHLVAGMT------- 184

Query: 165 DFGINTPTEAALCIITVIYVAAAIFNLNI-----PDTGARYAHQQRNPIKLIADFGNCFS 219
              I       L  + +    A +  L +      +T    A+ +RN    ++  GN  S
Sbjct: 185 ---IGIAVLGWLASLRIPLSPAPVPELKVNWNPFTETVRNLAYSRRNRPVFLSLLGN--S 239

Query: 220 TLWKDKLGQISLAVTTLFWGAGATLQFIVLKWAEKSLHMPLDKAAILQGVVALGVALGAV 279
             W              F+GA    QF V  +A+  LH       +L  V ++G+  G++
Sbjct: 240 WFW--------------FYGAIMLAQFPV--YAKNYLHGDHSVFVLLLAVFSVGIGAGSL 283

Query: 280 GAARFVPLKKSLSVMPLGIVMGLVVMAMTM-------VTSV--------------WVAYP 318
              R    K  + ++P G + GL V  + +       VT                W    
Sbjct: 284 LCERLSGHKVEIGLVPFGSI-GLSVFGLELYFASQAYVTPTAMLDLGGFLAQGGSWRILI 342

Query: 319 LLIIIGALSGYFVVPMNALLQHR 341
             + IG   G ++VP+ AL+Q R
Sbjct: 343 DCLGIGVFGGLYIVPLFALIQTR 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,118,587
Number of extensions: 40471
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,203,190
Effective search space: 401865460
Effective search space used: 401865460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)