BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0072.p
         (382 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillu...   554   e-159
gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillu...   135   8e-33

>gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 359

 Score =  554 bits (1427), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/360 (75%), Positives = 306/360 (85%), Gaps = 3/360 (0%)

Query: 21  MPRPLVATIDISALQHNLAVARSRAPDAKVWAVVKAQAYGHGLGRAVRAFADADGLALIE 80
           MPRP+VA+I ISALQHNLAVAR+ AP A+VW V+KA  YGHGL RA+R FA ADGLALIE
Sbjct: 1   MPRPIVASISISALQHNLAVARAHAPGARVWGVLKANGYGHGLERAMRGFAAADGLALIE 60

Query: 81  VNYAVQLRELGWSKPILLLEGFFDADDIPVLARHGLQFAVHCDEQIGLLEAAGLDAQAAQ 140
            +YAV+LRELGW+KPILLLEGFFDADD+PVLA+H +QFAVHC+EQI  LEA      AA 
Sbjct: 61  PDYAVRLRELGWTKPILLLEGFFDADDLPVLAQHDIQFAVHCEEQIAQLEAF---TAAAS 117

Query: 141 FDVHLKMNSGMNRLGFKPEAYRAAYERLQKLACVRSITMITHFANADDPANPDLPLAEQV 200
              HLKMNSGMNRLGFKPE YRAAY RLQK+  V SIT++THFANADD  NP LPLAEQV
Sbjct: 118 LHAHLKMNSGMNRLGFKPETYRAAYARLQKIPSVASITLMTHFANADDAGNPLLPLAEQV 177

Query: 201 RRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGTAKEFGLRAAMTL 260
           RRF A + GL G  S  NSAADLMHA+LA +WVR GVMLYGGTPGGG+A +FGLRAAMTL
Sbjct: 178 RRFQAGSEGLDGPRSLCNSAADLMHAELANDWVRPGVMLYGGTPGGGSAADFGLRAAMTL 237

Query: 261 ESKIIGVQDIVPGDAVGYGSRFVADKAMKIGIVACGYADGYPRHAPNNTAVIVDGVRTGT 320
           ES+IIG+Q +  G+A+GYGSRFVADK MKIG+VACGYADGYPRHAPN T V+VDGV+TGT
Sbjct: 238 ESRIIGIQQVPAGEAIGYGSRFVADKPMKIGVVACGYADGYPRHAPNGTPVLVDGVKTGT 297

Query: 321 IGRVSMDMLTVDLSHIPGAGVGSRVVLWGEELPIDEVASAAGTIGYELMCALAPRVSVLE 380
           +GRVSMDMLTVDL+HIP A VGS+V LWG +LPIDEVA AAGTIGYELMCALAPRV+V E
Sbjct: 298 VGRVSMDMLTVDLTHIPDADVGSQVELWGSKLPIDEVAYAAGTIGYELMCALAPRVAVRE 357


>gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 368

 Score =  135 bits (339), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 174/365 (47%), Gaps = 30/365 (8%)

Query: 28  TIDISALQHNLAVARSRAPDAKVWAVVKAQAYGHGLGRAVRAFADADGLALIE--VNYAV 85
           TID+ A+  N     +R   A+  AVVKA AYG G    VRA  DA         V+  V
Sbjct: 10  TIDLPAIVANWKTLSARVAPARCGAVVKADAYGLGATMVVRALLDAGCREFFVALVSEGV 69

Query: 86  QLREL---GWSK--PILLLEGFFDADDIPVLARHGLQFAVHCDEQIGLLEAAGLDAQAAQ 140
            L++     W K   + +L G    D++  L  +GL   ++  EQ+           A Q
Sbjct: 70  SLKQTLADRWPKGARLHILNGTLPGDELLCL-HYGLTPVLNSLEQV-----RSWQGYARQ 123

Query: 141 FD----VHLKMNSGMNRLGFKPEAYRAAYERLQKLACVRSITMITHFANADDPANP---- 192
            D      L++++GM RLG  P       E    LA +    +++H  +A++ ANP    
Sbjct: 124 LDFPLAAALQVDTGMARLGLAPAEVAQLTESRAGLAGIAPTFLMSHLVSAEETANPLNQH 183

Query: 193 DLPLAEQVRRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGTAKEF 252
            L     +RR     AG       ANS+   + AD  +  VR G  LYG  PGG  A   
Sbjct: 184 QLERFVAIRRHWPEIAG-----CLANSSGIFLGADFHFGCVRPGAALYGVHPGG--AGPN 236

Query: 253 GLRAAMTLESKIIGVQDIVPGDAVGYGSRFVADKAMKIGIVACGYADGYPRHAPNNTAVI 312
            +R  + L++ +I  +++  G++VGY   + A +  ++G +A GYADGY R A N   + 
Sbjct: 237 PMRPVLRLQAPLIQWRELQAGESVGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLR 296

Query: 313 VDGVRTGTIGRVSMDMLTVDLSHIPGAGV--GSRVVLWGEELPIDEVASAAGTIGYELMC 370
           ++GV    IGRVSMD +TVDLS I  A +  G    +   +  I+ +A  AGT  YE++ 
Sbjct: 297 LEGVEAPLIGRVSMDSITVDLSAIDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILT 356

Query: 371 ALAPR 375
           +L  R
Sbjct: 357 SLRHR 361


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,277,024
Number of extensions: 56540
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 2
Length of query: 382
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,207,925
Effective search space: 356337875
Effective search space used: 356337875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)