BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0070.p
         (69 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311467|ref|YP_003775559.1| secreted protein [Herbaspirillu...    87   2e-19

>gi|300311467|ref|YP_003775559.1| secreted protein [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score = 87.4 bits (215), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 2   GFEAVLCWNNRQRCWNVTNNASGSTGAFNGKDAARPFTLHYRVRGGGQLGP-PARGEMNQ 60
           GFEA+LCW +   CW+VT+  +GST  FNG+DA++PF L+YRVR    +G  P +GE+NQ
Sbjct: 118 GFEALLCWQDAGSCWHVTDANTGSTDFFNGRDASKPFQLYYRVRARAAVGEAPIKGEINQ 177

Query: 61  VIVTYDLPG 69
           VIVTY++PG
Sbjct: 178 VIVTYNIPG 186


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 254,449
Number of extensions: 9476
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 69
Length of database: 1,619,870
Length adjustment: 41
Effective length of query: 28
Effective length of database: 1,425,735
Effective search space: 39920580
Effective search space used: 39920580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)