BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0067.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311469|ref|YP_003775561.1| oxidative stress resistance two...   174   1e-45
gi|300310849|ref|YP_003774941.1| two component transcription reg...    71   1e-14
gi|300311515|ref|YP_003775607.1| two component response regulato...    70   5e-14
gi|300313830|ref|YP_003777922.1| response regulator protein [Her...    64   2e-12
gi|300313665|ref|YP_003777757.1| two component transcription reg...    59   7e-11

>gi|300311469|ref|YP_003775561.1| oxidative stress resistance two
           component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 253

 Score =  174 bits (440), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/88 (95%), Positives = 86/88 (97%)

Query: 1   LKKKGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL 60
           LKK G+T+ LTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL
Sbjct: 166 LKKNGDTISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL 225

Query: 61  IEPDPANPLYIQTVWGLGYVFIPEGKPR 88
           IEPDPANPLYIQTVWGLGYVFIPEGKPR
Sbjct: 226 IEPDPANPLYIQTVWGLGYVFIPEGKPR 253


>gi|300310849|ref|YP_003774941.1| two component transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 248

 Score = 71.2 bits (173), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%)

Query: 1   LKKKGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL 60
           + + G  V L+  EF +LKVF  +  + L+R++L+E+ +GRE + FDRS+D+QISRLR+ 
Sbjct: 155 VNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQK 214

Query: 61  IEPDPANPLYIQTVWGLGYVF 81
           +  D   P  I+TV   GYV 
Sbjct: 215 LGDDARTPTIIKTVRNEGYVL 235


>gi|300311515|ref|YP_003775607.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score = 69.7 bits (169), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%)

Query: 4   KGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEP 63
            G+ + LT+ EF++L+V ARNA +P+S++ L E   GR    FDR++DV +S +R+ I  
Sbjct: 149 NGKPLELTSSEFNLLEVLARNAGKPVSKQHLSEQGLGRPLARFDRNIDVHLSSIRQKIAA 208

Query: 64  DPANPLYIQTVWGLGYVFIPE 84
             ++   IQTV+ LGY FI E
Sbjct: 209 LGSDKSCIQTVYRLGYQFIKE 229


>gi|300313830|ref|YP_003777922.1| response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score = 63.9 bits (154), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 46/81 (56%)

Query: 1   LKKKGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL 60
           +  +G+ VPLT  ++ +LK F  +    L R  L E  RGR+    DRSLDVQIS+LR  
Sbjct: 148 VDSQGDIVPLTGMDYQLLKYFVEHPGDVLDRNVLCEETRGRDAGPLDRSLDVQISKLRLR 207

Query: 61  IEPDPANPLYIQTVWGLGYVF 81
           +      P  I+TV G GYVF
Sbjct: 208 LNDGGRQPHLIKTVRGAGYVF 228


>gi|300313665|ref|YP_003777757.1| two component transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 58.9 bits (141), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 4   KGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEP 63
            G T+ L   ++ VL+    + R+ LSR+ L+    G+E   FDRS+DV ISRLR+ +  
Sbjct: 155 SGVTITLGGSDYQVLRALLEHPRRALSRDFLLNTVYGKEAMPFDRSIDVCISRLRQQLGD 214

Query: 64  DPANPLYIQTVWGLGYVFIPE 84
           +P  P  I+TV   GY+ + +
Sbjct: 215 NPREPALIRTVRNTGYMLMAD 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 276,160
Number of extensions: 9311
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 6
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)