BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0064.p (219 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 382 e-108 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 139 2e-34 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 139 3e-34 gi|300310495|ref|YP_003774587.1| amino acid ABC transporter perm... 129 2e-31 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 127 7e-31 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 382 bits (982), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/218 (84%), Positives = 208/218 (95%) Query: 1 MEIWDLLRQAAPVMLRGVGYTLLFALSSMLGGLVLGFVLAVARIVPWKFVHWPAAVYVSL 60 MEI +LL+QAAP + +GVGYTLLFAL+SMLGGLVLGFVLAVARIVPW+ +HWPAA+YVS+ Sbjct: 3 MEILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSM 62 Query: 61 MRGTPLLVQIFVVYYGLPSVGIEFSPLMAGVLTLSLNAGAYLSESLRGAILGVTRGQWSA 120 MRGTPLLVQIFVVYYGLP +GIEFSPL AGVLTLSLNA AYLSESLRGAILGVTRGQW+A Sbjct: 63 MRGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNA 122 Query: 121 SYSLGLTYPQTLRYVVVPQAIRIAVPSMSNTLISLIKDTSLVSVITVTELMLSTKEIIAV 180 ++S+GLTY QTLRY++VPQA+RIAVPSMSNTLISLIKDTSLVSVITVTELML+TKE+IAV Sbjct: 123 AFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAV 182 Query: 181 TFRPLPLYIAAAMVYWFLSICFEALQHRLEKKLGRAHQ 218 TFRPLPLY+AAA +YW LS+CFEALQHRLEKKLG+AHQ Sbjct: 183 TFRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 220 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 133/242 (54%), Gaps = 27/242 (11%) Query: 4 WDLLRQAAPVMLRGVGYTLLFALSSMLGGLVLGFVLAVARIV-----PWKF----VHWPA 54 W +++ AP+ +GV TL +L S+L G V+G ++ + R+ PWK+ + W A Sbjct: 5 WSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSMRWLA 64 Query: 55 AVYVSLMRGTPLLVQIFVVYYGL------------------PSVGIEFSPLMAGVLTLSL 96 YV+ RGTPL VQI ++++ + ++ ++ ++G + LSL Sbjct: 65 GFYVAFFRGTPLFVQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTVALSL 124 Query: 97 NAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQTLRYVVVPQAIRIAVPSMSNTLISLI 156 NAGAY+SE R I + RGQ A+ SLG+ Y T+RYVV+PQA R +P + N I+L+ Sbjct: 125 NAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAITLL 184 Query: 157 KDTSLVSVITVTELMLSTKEIIAVTFRPLPLYIAAAMVYWFLSICFEALQHRLEKKLGRA 216 KD+SLVS I + EL + + + R YI +++Y+ ++IC + RLE K Sbjct: 185 KDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLESKYSAP 244 Query: 217 HQ 218 H+ Sbjct: 245 HR 246 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 139 bits (349), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 28/242 (11%) Query: 4 WDLLRQAAPVMLRGVGYTLLFALSSMLGGLVLGFVLAVARIVP-----WKF-----VHWP 53 W+++ + P+ + G TL A+ ++ G G VL V R+ WK+ V WP Sbjct: 7 WEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQWP 66 Query: 54 AAVYVSLMRGTPLLVQIFVVYYGL------PSVGI------------EFSPLMAGVLTLS 95 YVS +RGTPL VQI ++++ L PS G+ + + VL ++ Sbjct: 67 IRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAIT 126 Query: 96 LNAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQTLRYVVVPQAIRIAVPSMSNTLISL 155 LN+GAY+SE R I + RGQ AS SLG++Y TLR VV+PQA R +P + N I++ Sbjct: 127 LNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNNAIAI 186 Query: 156 IKDTSLVSVITVTELMLSTKEIIAVTFRPLPLYIAAAMVYWFLSICFEALQHRLEKKLGR 215 +KD+SL S I + EL + + + R Y+ +++YW +++ AL LE + G+ Sbjct: 187 VKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLEARYGK 246 Query: 216 AH 217 Sbjct: 247 GD 248 >gi|300310495|ref|YP_003774587.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 124/208 (59%), Gaps = 2/208 (0%) Query: 12 PVMLRGVGYTLLFALSSMLGGLVLGFVLAVARIVPWKFVHWPAAVYVSLMRGTPLLVQIF 71 P++L+G T+ + S L V+G +LA+ ++ K V A V+++RG P++VQ+F Sbjct: 11 PILLKGALVTVEVTIYSFLLSSVIGLLLALMKVSRLKPVALAGATIVNIIRGLPIIVQLF 70 Query: 72 VVYYGLPSVGIEFSPLMAGVLTLSLNAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQT 131 +Y+ LP +GI+ S AGV+ L + AY +E+ R I V GQ A+ S+G+ P Sbjct: 71 YIYFVLPDIGIQLSAFQAGVVGLGIAYSAYQAENFRAGIEAVDMGQIEAAQSIGMRGPLI 130 Query: 132 LRYVVVPQAIRIAVPSMSNTLISLIKDTSLVSVITVTELMLSTKEIIAVTFRPLPLYIAA 191 +R VV+PQA RIA+P NTL+ ++KD+SLVS ITV E+ + + I + TF+ + +Y Sbjct: 131 MRRVVLPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTRAGQMIASSTFQNMTVYTTV 190 Query: 192 AMVYWFLSICFEALQHRLE--KKLGRAH 217 A++Y LS+ L RLE GRA Sbjct: 191 AVLYLLLSLPLVFLIRRLEIRNSKGRAR 218 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 127 bits (319), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 119/205 (58%) Query: 14 MLRGVGYTLLFALSSMLGGLVLGFVLAVARIVPWKFVHWPAAVYVSLMRGTPLLVQIFVV 73 +L+ +T++ +L + + G V GFV+A+ R+ P + A+ Y+ +++G PLLV +FV Sbjct: 12 LLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVA 71 Query: 74 YYGLPSVGIEFSPLMAGVLTLSLNAGAYLSESLRGAILGVTRGQWSASYSLGLTYPQTLR 133 Y+GL G + +PL+A ++ ++ A+L E RG I V + QW AS LG + L Sbjct: 72 YFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQLT 131 Query: 134 YVVVPQAIRIAVPSMSNTLISLIKDTSLVSVITVTELMLSTKEIIAVTFRPLPLYIAAAM 193 V++PQA++IA P ++ ++K+TSL SVI +L + + I TF+P ++ A+ Sbjct: 132 KVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVAL 191 Query: 194 VYWFLSICFEALQHRLEKKLGRAHQ 218 +Y+ L AL E+KL +H+ Sbjct: 192 IYFCLCFPLSALSKHFERKLNVSHR 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 601,729 Number of extensions: 22651 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 19 Length of query: 219 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 137 Effective length of database: 1,231,600 Effective search space: 168729200 Effective search space used: 168729200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)