BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0062.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/sign... 358 e-100 gi|300311002|ref|YP_003775094.1| amino acid ABC transporter/sign... 91 7e-20 gi|300309409|ref|YP_003773501.1| glutamine ABC transporter perip... 85 4e-18 gi|300313610|ref|YP_003777702.1| amino acid ABC transporter/sign... 84 1e-17 gi|300312810|ref|YP_003776902.1| glutamine ABC transporter/signa... 82 3e-17 >gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 358 bits (919), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/209 (87%), Positives = 196/209 (93%), Gaps = 7/209 (3%) Query: 12 LLAGL---LLAASVSATVGAHAADLLDTVKARGTLKVALEGNYPPFNFKDPKTSELTGFE 68 LLAG+ LLA+S+S + AADLL +VK+ GTLKVALEGNYPPFNFKDPKT ELTGFE Sbjct: 9 LLAGVGAALLASSLSVS----AADLLQSVKSSGTLKVALEGNYPPFNFKDPKTGELTGFE 64 Query: 69 VDVAKLLAARLGLKPEFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLS 128 VDVAKLLAA+LG+KP FTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLS Sbjct: 65 VDVAKLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLS 124 Query: 129 SAQLIVRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKSVPGIDVKTYPGSPEYLSDLAS 188 SAQLIVRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAK+VPGIDV+TYPGSPEYL+DLA+ Sbjct: 125 SAQLIVRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKAVPGIDVRTYPGSPEYLADLAA 184 Query: 189 GRIDAALNDSLLVGYLLKSSNLPLKGGSP 217 GRIDAALNDSLLVGY+LKS+NLPLK GSP Sbjct: 185 GRIDAALNDSLLVGYILKSTNLPLKAGSP 213 >gi|300311002|ref|YP_003775094.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 279 Score = 90.9 bits (224), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 3/179 (1%) Query: 15 GLLLAASVSATVGAHAADLLDTVKARGTLKVALEGNYPPFNFKDPKTSELTGFEVDVAKL 74 G LL A + G AD L ++ARGTL A N P F DP++ ++ GF+VD+ Sbjct: 14 GSLLVACAALFPGLAQADRLAEIQARGTLVCATLANNEPLGFPDPQSRQVVGFDVDMCAA 73 Query: 75 LAARLGLKPEFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQLIV 134 +A RLG++ E + G L L G+ D++ +G T ER + DF+ + + +LIV Sbjct: 74 VARRLGVQMEQKSVTVEGRLPALIEGQADLVSAALGYTRERARQIDFTASHYQNPIKLIV 133 Query: 135 RKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKSV-PGIDVKTYPGSPEYLSDLASGRID 192 + D + DL K++ + + EQ + V P ++T+ +P+ LA GR D Sbjct: 134 QSDSG--LNLISDLADKRISANRSSTPEQAVRRVLPKAMLQTFADTPQAFLALAQGRAD 190 >gi|300309409|ref|YP_003773501.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 85.1 bits (209), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 10/174 (5%) Query: 39 ARGTLKVALEGNYPPFNFKDPKTSELTGFEVDVAKLLAARLGLKPEFTTTEWSGILAGLG 98 A T V G Y PF F+ PK EL GF++D+ K ++ K + +T W GI A LG Sbjct: 26 ADQTYVVGAGGTYRPFEFETPK-KELVGFDIDLIKAISQASNFKIQLVSTPWEGIFATLG 84 Query: 99 AGKYDVIINQVGITDERQKAFDFSDPYTLSSAQLIVRKDEKREFKSLEDLKGKKLGLGQG 158 G D+II+ + ITD+R + DFS PY + +I D K SL DLK ++ + Sbjct: 85 QGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIITNADAK--ITSLSDLKKTQVAVVNS 142 Query: 159 TN-----FEQKAKSVPGIDVKTYPGSPEYLSDLASGRIDAALNDSLLVGYLLKS 207 T E+ K+ I + + L +L G +DAA+ D ++ + +KS Sbjct: 143 TAGDIVVSEELGKASTAI--HRFDNTVLMLEELYRGGVDAAVGDVGVIKFYIKS 194 >gi|300313610|ref|YP_003777702.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 96/173 (55%), Gaps = 6/173 (3%) Query: 45 VALEGNYPPFNFKDPKTSELTGFEVDVAKLLAARLGLKPEFTTTEWSGILAGLGAGKYDV 104 V +E Y PF+ ++ + ++ GF++D+ K LA ++G++ +F T + G L G D+ Sbjct: 51 VGVESAYAPFSSEN-EQKDVVGFDIDIMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDL 109 Query: 105 IINQVGITDERQKAFDFSDPYTLSSAQLIVRKDEKREFKSLEDLKGKKLGLGQGTNFEQK 164 +I+ + ITDER+K+ FS+PY +++ Q I + +EDLK +G T+ ++ Sbjct: 110 LISAITITDERKKSVAFSEPYFVAT-QTIALPAADTKVSKMEDLKPLTVGTQSATSGDEL 168 Query: 165 AKSVPGID---VKTYPGSPEYLSDLASGRIDAALNDSLLV-GYLLKSSNLPLK 213 + V G + +K + +P L +L SG +DA + D +V Y+ + N L+ Sbjct: 169 VQQVLGKNSAKIKRFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLR 221 >gi|300312810|ref|YP_003776902.1| glutamine ABC transporter/signal transduction system periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 5/168 (2%) Query: 42 TLKVALEGNYPPFNFKDPKTSELTGFEVDVAKLLAARLGLKPEFTTTEWSGILAGLGAGK 101 TL VA + + PF FKD ++ GF++D+ +A +G+ + +++GI+ L Sbjct: 27 TLVVACDTAFVPFEFKD--RNQYVGFDIDLWDAIAKDIGVTYKLQPMDFNGIIPALQTKN 84 Query: 102 YDVIINQVGITDERQKAFDFSDPYTLSSAQLIVRKDEKREFKSLEDLKGKKLGLGQGTN- 160 DV + + I DER+K DFSD Y S L+V KS+ DL GK L + GT+ Sbjct: 85 VDVALAGITIKDERKKVIDFSDGYYDSGFSLMVPVGS--SIKSVADLAGKALAVKSGTSA 142 Query: 161 FEQKAKSVPGIDVKTYPGSPEYLSDLASGRIDAALNDSLLVGYLLKSS 208 F+ + ++ +P +L +GR+DAA++D+ V Y + ++ Sbjct: 143 FDYAKANFKATELHQFPNIDNAYLELQTGRVDAAMHDTPNVLYYIATA 190 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 595,230 Number of extensions: 22251 Number of successful extensions: 75 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 67 Number of HSP's successfully gapped: 15 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)