BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0061.p (673 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 1125 0.0 gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 303 2e-83 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 219 7e-58 gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 214 1e-56 gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 70 7e-13 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/673 (83%), Positives = 604/673 (89%), Gaps = 13/673 (1%) Query: 1 MIRFQQVTLARGVKPLLENVDVTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDY 60 MIRFQQV+L RGVKPLLENVD+TLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNID+ Sbjct: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDF 60 Query: 61 PTKWRVAYVAQETPALDRAAVEYAIDGDVTLRRLEAQLAAAEAEPESAENGIRIGELYGA 120 P +WR+AYVAQETPALDR A+EYAIDGD LR+LEA+LA AEA+P+ +G I EL+ A Sbjct: 61 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTA 120 Query: 121 LADADVYTVRSRAEQLLLGLGFTLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP 180 LADAD YTVRSRAEQLLLGLGF+LEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP Sbjct: 121 LADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP 180 Query: 181 TNHLDLDAIIWLEDWLKRYAGTLIIISHDRDFLDGVVNVIVHIDERKLKRYSGNYSAFER 240 TNHLDLDAIIWLEDWLKRY GTL+IISHDRDFLDGVVNVIVHID+RKLKRYSGNYSAFER Sbjct: 181 TNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFER 240 Query: 241 QRAAQLELAAGMIEKQMRQRAHLHSFIDRFKAKASKARQAQSRMKALAKMEELAPLRAAA 300 QR+AQLEL AGMIEKQ RQRAHL SFIDRFKAKA+KARQAQSRMKAL+KMEELAPLRAAA Sbjct: 241 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA 300 Query: 301 EFSFEFREPLSAPNPLLVMEKVNAGYRSEDPETYEISEKVIVGGIDFSLQTGQRIGLLGV 360 EFSFEFREPLSAPNPLLVMEKVNAGY E +K+IV GIDFSLQ GQRIGLLGV Sbjct: 301 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGLLGV 360 Query: 361 NGAGKSTLIKTIANELDPIAGTAQFGKGLVIGYFAQHQVEMLRHDESPLWHLARIAPDVR 420 NGAGKSTLIKT+A E+DP++GTA+ GKGLVIGYFAQHQVEMLRHDESPLWHL R+APDVR Sbjct: 361 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR 420 Query: 421 EQELRNFLGSFNFNGVMASSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 EQELRNFLGSFNFNG MA+SSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR Sbjct: 421 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 Query: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVADGKLQPFDGDLDDYRDWLFKTKLAA 540 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVA+GKLQPFDGDLDDY+DWLFKTKLAA Sbjct: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAA 540 Query: 541 KNSATEAAQAAAAKPKAEPKIEQKAPEPVAAVSAAPVGDRREQKRLDAGERQRLAGLKKP 600 +N A AA A +PV + AA V DR+EQKRL+A +RQ+++ LKKP Sbjct: 541 RNDAAAAAPLPTAS------------QPVESAPAALV-DRKEQKRLEAEQRQKMSALKKP 587 Query: 601 IESRIKRLEEQIAKCNEKKAVIDARLAAPDIYDAANKEELKKLIADQAYCTKELEQLEED 660 IE+RIKRL+EQIAK N +KA IDARLA+PDIYDAANKEELK LI DQAYC+KELEQLE + Sbjct: 588 IEARIKRLDEQIAKLNVRKAEIDARLASPDIYDAANKEELKTLITDQAYCSKELEQLENE 647 Query: 661 WLGQQEALEQLVA 673 WL QQEALEQL A Sbjct: 648 WLEQQEALEQLQA 660 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 303 bits (777), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 188/541 (34%), Positives = 286/541 (52%), Gaps = 28/541 (5%) Query: 1 MIRFQQVTLARGVKPLLENVDVTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDY 60 M+ +T+ G KPL EN+ V G++ GLIGANG GKS+ +L G+L GN+ Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 Query: 61 PTKWRVAYVAQETPALDRAAV-EYAIDGDVTLRRLEAQLAAAEAEPESAENG-IRIGELY 118 R+ + Q+ A + V + + G V + ++ A A P++ ++ ++ +L Sbjct: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 Query: 119 GALADADVYTVRSRAEQLLLGLGFTLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLD 178 A+ D YT +RA +LLLG+G +EQ P+++ + GW++R+ LAQAL D+LLLD Sbjct: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 Query: 179 EPTNHLDLDAIIWLEDWLKRYAGTLIIISHDRDFLDGVVNVIVHIDERKLKRYSGNYSAF 238 EPTN+LD++ I WLE+ L T+IIISHDR FL+ V + +D LK Y GNY + Sbjct: 181 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 Query: 239 ----ERQRAAQLELAAGMIEKQMRQRAHLHSFIDRFKAKASKARQAQSRMKALAKMEELA 294 + RA QL A EK A L F+ RF A SKARQA SR K + K++ Sbjct: 241 MLASSQARAQQLAANAKAKEKV----AELQDFVRRFSANKSKARQATSRAKQIDKIK--- 293 Query: 295 PLRAAAEFSFEFREPLSAPNPLLVMEKVNAGYR--SEDPETYEISEKVIVGGIDFSLQTG 352 E +P S NP + E +R E + ++ I ++ G Sbjct: 294 ---------VEDIKPSSRVNPFIRFEGEKKLHRLAVETQGITKTYDRDIFKNFSIMVEAG 344 Query: 353 QRIGLLGVNGAGKSTLIKTIANE---LDPIAGTAQFGKGLVIGYFAQHQVEMLRHDESPL 409 ++I ++G NGAGK+TL+++I + L P G ++ + +GY Q E E+ Sbjct: 345 EKIAIIGANGAGKTTLLRSIGGDVTGLHPDGGLVKWAENANVGYMPQDPTEEFAGGETLT 404 Query: 410 -WHLARIAPDVREQELRNFLGSFNFNGVMASSSIAPFSGGEKARLALALIVWQRPNLLLL 468 W +Q +R LG F+G S+ SGGEK R+ ++ R N+LL+ Sbjct: 405 DWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLM 464 Query: 469 DEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVADGKLQPFDGDLDD 528 DEPTNH+D+E+ E+L +AL ++ GTL+ VSHDR + + + L V DG++ F G +D Sbjct: 465 DEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGGYED 524 Query: 529 Y 529 Y Sbjct: 525 Y 525 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 219 bits (557), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 171/554 (30%), Positives = 268/554 (48%), Gaps = 52/554 (9%) Query: 1 MIRFQQVTLARGVKPLLENVDVTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDY 60 +I LA G LL++ + +L G++IGLIG NG GKSSL ++ G D G + Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 61 PTKWRVAYVAQETPALDRAAVEYAIDGDVTLRRLEAQLAAAEAEPE--SAENGI----RI 114 ++AYV QE + V A+ L L A LA EA +N R+ Sbjct: 63 QQNLKIAYVDQEPHFPEEMTVFDAVAS--GLGELPALLAEYEAITGQFGGDNDDALLERM 120 Query: 115 GELYGALADADVYTVRSRAEQLLLGLGFTLEQMERPVASFSGGWRMRLNLAQALMCPSDL 174 ++ L AD +++ ++ E L L + + SGG + R+ LA L+ D+ Sbjct: 121 HQIQTVLDAADAWSIGNKVETTLDKLNLNRDAR---IGELSGGMKKRVALACGLVGNPDV 177 Query: 175 LLLDEPTNHLDLDAIIWLEDWLKRYAGTLIIISHDRDFLDGVVNVIVHIDERKLKRYSGN 234 LLLDEPTNHLD +I+WLE L+ + G+++ I+HDR FLD V I+ +D K+ + GN Sbjct: 178 LLLDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGN 237 Query: 235 YSAFERQRAAQLELAAGMIEKQMRQRAHLHSFIDRFKAKASKARQAQSRMKALAKMEELA 294 ++ ++ ++A ++ + + A F+ + + K QA+ R + ++ L Sbjct: 238 FTTYQTRKAE-------LLANEEVENAKFDKFLAQEEVWIRKGVQAR-RTRDEGRVRRLE 289 Query: 295 PLRA--------AAEFSFEFREPLSAPNPLLVMEKVNAGYRSEDPETYEISEKVIVGGID 346 LR + E + + +E VN Y K IV Sbjct: 290 ALRVQRSERRERQGQVKLEVGTGERSGKIVAELENVNKAY----------GPKTIVRDFS 339 Query: 347 FSLQTGQRIGLLGVNGAGKSTLIKTIANELDPIAGTAQFGKGLVIGYFAQHQVEMLRHDE 406 L G ++GL+G NGAGK+TL+K I E P +GT + G + + YF Q + ++ ++E Sbjct: 340 TILMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSGTVKQGTKMQVAYFDQMRAQL--NEE 397 Query: 407 SPLWHLARIAP-------DVREQELRNFLGSFNFNGVMASSSIAPFSGGEKARLALALIV 459 + L IAP + + + + +L F F A S + SGGE+ RL LA + Sbjct: 398 TTLADT--IAPGSDWVEVNGQRKHVMTYLSDFLFAPERARSPVRTLSGGERNRLLLARLF 455 Query: 460 WQRPNLLLLDEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIV-ADGK 518 + N+L+LDEPTN LD++T E L L ++EGT+ LVSHDR L Q + +G Sbjct: 456 AKPANVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQVIASEGNGV 515 Query: 519 LQPFDGDLDDYRDW 532 + + G Y DW Sbjct: 516 WREYVG---GYSDW 526 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 214 bits (546), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 164/539 (30%), Positives = 273/539 (50%), Gaps = 50/539 (9%) Query: 14 KPLLENVDVTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDYPTKWRVAYVAQET 73 + +L+++ ++ PG KIG++G NG+GKS+L ++ G +G + Y+ QE Sbjct: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQE- 77 Query: 74 PALD-----RAAVEYAIDGDV--TLRRLEAQLAA-AEAEPESAENGIRIGELYGALADAD 125 P LD R VE A+ G+V +L+A AA AE + + L +A AD Sbjct: 78 PQLDAEKTVRQEVESAL-GEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAAD 136 Query: 126 VYTVRSRAEQLLLGLGFTLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLD 185 ++ + E + L + + SGG + R+ L + L+ D+LLLDEPTNHLD Sbjct: 137 GNSLNQQLE--MAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLD 194 Query: 186 LDAIIWLEDWLKRYAGTLIIISHDRDFLDGVVNVIVHIDERKLKRYSGNYSAFERQRAAQ 245 +++ WLE +L+R+ GT++ I+HDR FLD I+ +D + GNYS++ Q+ A+ Sbjct: 195 AESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEAR 254 Query: 246 LELAAGMIEKQMRQRAHLHSFIDRFKAKASKARQAQSRMKALAKMEELAPLRAAAEFSFE 305 L+ + RQ+ + + K RQA+S+ + LA+ EL +E+ ++ Sbjct: 255 LKQEEA--SESARQKTIAKEL--EWVRQNPKGRQAKSKAR-LARFNEL------SEYEYQ 303 Query: 306 FR---EPLSAP------NPLLVMEKVNAGYRSEDPETYEISEKVIVGGIDFSLQTGQRIG 356 R + + P N ++ + V+ GY +++++ ++F + G +G Sbjct: 304 KRNETQEIFIPVAERLGNEVIEFKNVSKGY----------GDRLLIDDLNFKIPAGAIVG 353 Query: 357 LLGVNGAGKSTLIKTIANELDPIAGTAQFGKGLVIGYFAQHQVEMLRHDESPLWHLARIA 416 ++G NGAGKSTL + +A P +G G + + Q + ++ ++ ++ Sbjct: 354 IIGPNGAGKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDL--GNKKTVFEDVSGG 411 Query: 417 PDVR-----EQELRNFLGSFNFNGVMASSSIAPFSGGEKARLALALIVWQRPNLLLLDEP 471 D+ E R +LG FNF G + SGGE+ RL LA + Q N+LLLDEP Sbjct: 412 ADILTVGRFEMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEP 471 Query: 472 TNHLDLETREALTMALAQFEGTLVLVSHDRHLL-RATTDQFLIVADGKLQPFDGDLDDY 529 +N LD+ET AL AL +F GT++++SHDR L R T D ++ FDG+ +Y Sbjct: 472 SNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEY 530 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 42/220 (19%) Query: 15 PLLENVDVTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNI--------DYPTKWR- 65 P L N+ +T+ PG+K+G++G +G+GKS+L L G A++G++ Y + R Sbjct: 360 PTLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRM 419 Query: 66 --VAYVAQETPALDRAAVEYAIDGDVTLRRLEAQLAAAEAEPESAENGIRIGELYGALAD 123 + + QE D GD R+ Q+ A S ++ I GEL Sbjct: 420 RCIGFKPQEPFLFDGTVAANIFVGD----RVPGQVYEAALAVSSLDDLIARGEL------ 469 Query: 124 ADVYTVRSRAEQLLLGLGFTLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNH 183 L+Q+ + + SGG R + LA+ + C +LLLDEPT Sbjct: 470 -------------------RLDQLIKAPGNLSGGQRQMVALARVIACTPRILLLDEPTTG 510 Query: 184 LDLDAIIWLEDWLKRYAG--TLIIISHDRDFLDGVVNVIV 221 +D + + L YAG TL++ +H L + ++V Sbjct: 511 IDQQTEARIIERLVGYAGGRTLVVATHSPALLRHMDRIVV 550 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,941,892 Number of extensions: 80327 Number of successful extensions: 948 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 935 Number of HSP's successfully gapped: 41 Length of query: 673 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 581 Effective length of database: 1,184,250 Effective search space: 688049250 Effective search space used: 688049250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)