BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0060.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311474|ref|YP_003775566.1| adenine-specific methylase/meth...   385   e-108
gi|300313562|ref|YP_003777654.1| polypeptide chain release facto...    97   2e-21

>gi|300311474|ref|YP_003775566.1| adenine-specific
           methylase/methyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 296

 Score =  385 bits (988), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/232 (77%), Positives = 210/232 (90%)

Query: 15  PEDRVPAAYITNEXTEDRVPAAYITNEAWLGGYRFFVDERVIVPRSFIAELIPEHFSPWV 74
           P++      +    ++DRVPAAYIT+EAWLG YRF+VDERVIVPRSFIAELIP+HFSPW+
Sbjct: 63  PDEIAAVMRVIERRSKDRVPAAYITHEAWLGAYRFYVDERVIVPRSFIAELIPQHFSPWI 122

Query: 75  QDPAQVENILDLCTGSGCLPILLADAFPQARVEAVDISPEALQVARRNVDDYELGDRINL 134
           QDP  +EN LDLCTGSGCLPILLADAFP A+++AVDIS +AL VAR+NVD+Y+L +RINL
Sbjct: 123 QDPEAIENALDLCTGSGCLPILLADAFPNAQIDAVDISADALAVARKNVDEYQLQERINL 182

Query: 135 VESDLYTKLPARKYDLIISNPPYVNADSMSKLPQEYLQEPQIALAGGKDGMDLVRKIVKG 194
           VESDLYT+LP RKYDLIISNPPYVN+ SM+KLPQEYL+EPQ+ALAGG+DGMDLVRKIV G
Sbjct: 183 VESDLYTQLPLRKYDLIISNPPYVNSGSMAKLPQEYLREPQLALAGGEDGMDLVRKIVAG 242

Query: 195 AAQRLTPNGVLIVEIGNERAYAEAAFPDLELTWVTTSAGDDMVFLVTADQLQ 246
           AA+RLTP GVL+VEIGNERA+AEAAFP+LELTW+TTSAGDDMVFLVTA+QLQ
Sbjct: 243 AAERLTPEGVLVVEIGNERAFAEAAFPELELTWLTTSAGDDMVFLVTAEQLQ 294


>gi|300313562|ref|YP_003777654.1| polypeptide chain release factors
           methylase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 13/191 (6%)

Query: 34  PAAYITNEAWLGGYRFFVDERVIVPR---SFIAELIPEHFSPWVQDPAQVENILDLCTGS 90
           P AYI  +    G    V   V++PR     + EL  E          Q  + LD+ TGS
Sbjct: 69  PIAYIVGQREFYGLDLRVSPDVLIPRPDTELLVELALERLP-------QGGSALDMGTGS 121

Query: 91  GCLPILLADAFPQARVEAVDISPEALQVARRNVDDYELGDRINLVESDLYTKLPA-RKYD 149
           G + + +A   P A+V A+D SP AL +AR N   +++  R+ L+ESD Y  L A + +D
Sbjct: 122 GAIAVAIAHTRPDAQVTALDASPAALAIARENASTHQV--RVRLLESDWYGALDADQAFD 179

Query: 150 LIISNPPYVNADSMSKLPQEYLQEPQIALAGGKDGMDLVRKIVKGAAQRLTPNGVLIVEI 209
           LI+SNPPY+ A  +     +   EP  AL    DG+  +R I++GA   L   G L++E 
Sbjct: 180 LIVSNPPYIVAGDIHLSQGDLRFEPVDALTDHADGLSDLRTIIEGAPAHLKAGGWLLMEH 239

Query: 210 GNERAYAEAAF 220
           G ++A A  A 
Sbjct: 240 GYDQAAAVRAL 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 776,622
Number of extensions: 32271
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)