BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0058.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311474|ref|YP_003775566.1| adenine-specific methylase/meth...   509   e-145
gi|300313562|ref|YP_003777654.1| polypeptide chain release facto...    97   2e-21

>gi|300311474|ref|YP_003775566.1| adenine-specific
           methylase/methyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 296

 Score =  509 bits (1310), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 239/294 (81%), Positives = 275/294 (93%)

Query: 9   MTPNNFATVRDILRYAITSFNTEKLFFGHGTNNAFDEAAYLILHTLKLPLDQLEPFLDAR 68
           MTPNNF+TVRD+LRYA+T FNTE+LFFGHG++NA DEAAYLILHTLKLPLDQL+PFLDAR
Sbjct: 1   MTPNNFSTVRDLLRYAVTRFNTEQLFFGHGSSNALDEAAYLILHTLKLPLDQLDPFLDAR 60

Query: 69  LLQGEIDNLLRVIMRRTEDRVPAAYITNEAWLGGYRFFVDERVIVPRSFIAELIPEHFSP 128
           LL  EI  ++RVI RR++DRVPAAYIT+EAWLG YRF+VDERVIVPRSFIAELIP+HFSP
Sbjct: 61  LLPDEIAAVMRVIERRSKDRVPAAYITHEAWLGAYRFYVDERVIVPRSFIAELIPQHFSP 120

Query: 129 WVQDPAQVENILDLCTGSGCLPILLADAFPQARVEAVDISPEALQVARRNVDDYELGDRI 188
           W+QDP  +EN LDLCTGSGCLPILLADAFP A+++AVDIS +AL VAR+NVD+Y+L +RI
Sbjct: 121 WIQDPEAIENALDLCTGSGCLPILLADAFPNAQIDAVDISADALAVARKNVDEYQLQERI 180

Query: 189 NLVESDLYTKLPARKYDLIISNPPYVNADSMSKLPQEYLQEPQIALAGGKDGMDLVRKIV 248
           NLVESDLYT+LP RKYDLIISNPPYVN+ SM+KLPQEYL+EPQ+ALAGG+DGMDLVRKIV
Sbjct: 181 NLVESDLYTQLPLRKYDLIISNPPYVNSGSMAKLPQEYLREPQLALAGGEDGMDLVRKIV 240

Query: 249 KGAAQRLTPNGVLIVEIGNERAYAEAAFPDLELTWVTTSAGDDMVFLVTADQLQ 302
            GAA+RLTP GVL+VEIGNERA+AEAAFP+LELTW+TTSAGDDMVFLVTA+QLQ
Sbjct: 241 AGAAERLTPEGVLVVEIGNERAFAEAAFPELELTWLTTSAGDDMVFLVTAEQLQ 294


>gi|300313562|ref|YP_003777654.1| polypeptide chain release factors
           methylase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 13/191 (6%)

Query: 90  PAAYITNEAWLGGYRFFVDERVIVPR---SFIAELIPEHFSPWVQDPAQVENILDLCTGS 146
           P AYI  +    G    V   V++PR     + EL  E          Q  + LD+ TGS
Sbjct: 69  PIAYIVGQREFYGLDLRVSPDVLIPRPDTELLVELALERLP-------QGGSALDMGTGS 121

Query: 147 GCLPILLADAFPQARVEAVDISPEALQVARRNVDDYELGDRINLVESDLYTKLPA-RKYD 205
           G + + +A   P A+V A+D SP AL +AR N   +++  R+ L+ESD Y  L A + +D
Sbjct: 122 GAIAVAIAHTRPDAQVTALDASPAALAIARENASTHQV--RVRLLESDWYGALDADQAFD 179

Query: 206 LIISNPPYVNADSMSKLPQEYLQEPQIALAGGKDGMDLVRKIVKGAAQRLTPNGVLIVEI 265
           LI+SNPPY+ A  +     +   EP  AL    DG+  +R I++GA   L   G L++E 
Sbjct: 180 LIVSNPPYIVAGDIHLSQGDLRFEPVDALTDHADGLSDLRTIIEGAPAHLKAGGWLLMEH 239

Query: 266 GNERAYAEAAF 276
           G ++A A  A 
Sbjct: 240 GYDQAAAVRAL 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 993,431
Number of extensions: 42316
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)