BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0057.p (375 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 712 0.0 gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 77 2e-15 gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 76 5e-15 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 58 1e-09 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/374 (90%), Positives = 359/374 (95%) Query: 1 MSKTLALTQELIALSSVTPEDKGCQARLAELLAPLGFVCETIQSGDVTNLWARKGTAQPL 60 MSKTLALTQEL++LSSVTPEDKGCQARLAELL PLGFVCETIQSG+VTNLWARKGTAQPL Sbjct: 3 MSKTLALTQELMSLSSVTPEDKGCQARLAELLTPLGFVCETIQSGEVTNLWARKGTAQPL 62 Query: 61 LAFAGHTDVVPTGPVDKWQSPPFVPTQRDGKLFGRGASDMKTSIAAMVVAVEEFVAAHPD 120 + FAGHTDVVPTGP++KWQS PF PT R+G+L+GRGASDMKTSIAAMVVA EEF AAHPD Sbjct: 63 VVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSIAAMVVACEEFTAAHPD 122 Query: 121 HKGSIGFLITSDEEGPATDGTVIVCNQLKARGEQLDYCIVGEPTSAKQLGDMIKNGRRGT 180 HKGSIGFLITSDEEGPA DGTV+VCN LKARGEQLDYCIVGEPTSAK LGDMIKNGRRGT Sbjct: 123 HKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIKNGRRGT 182 Query: 181 MSGKLTVKGIQGHIAYPQLAKNPIHLAAPALAELVAEKWDEGNEYYLPTSWQISNIHGGT 240 MSGKLTVKGIQGHIAYPQLA+NPIH AAPALAELVAE+WD GNEYYLPTSWQISNIHGGT Sbjct: 183 MSGKLTVKGIQGHIAYPQLARNPIHQAAPALAELVAEQWDAGNEYYLPTSWQISNIHGGT 242 Query: 241 GASNVIPGDVVIDFNFRFSTASTVDGLQQRVHAILDKHGFDYDLKWTVGGLPFLTPRGNL 300 GASNVIPG+V+IDFNFRFSTASTV+GLQQRVHAILDKHG +YDLKWTVGGLPFLTPRG+L Sbjct: 243 GASNVIPGEVMIDFNFRFSTASTVEGLQQRVHAILDKHGLEYDLKWTVGGLPFLTPRGDL 302 Query: 301 SDALASAIKAETGLDTELSTTGGTSDGRFIAQICPQVIEFGPPNDSIHKIDEYIEVRYID 360 SDAL+ AIK ETGLDTELSTTGGTSDGRFIAQICPQVIEFGPPNDSIHKIDE+IEVRYID Sbjct: 303 SDALSKAIKDETGLDTELSTTGGTSDGRFIAQICPQVIEFGPPNDSIHKIDEHIEVRYID 362 Query: 361 PLKNIYRRTMENLL 374 PLKNIYR+T+ENLL Sbjct: 363 PLKNIYRKTLENLL 376 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 143/335 (42%), Gaps = 28/335 (8%) Query: 55 GTAQPLLAFAGHTDVVPTGPVDKWQSPPFVPTQRDGKLFGRGASDMKTSIAAMVVAVEEF 114 G+ + + +GHTDVVP KW + PF T++DG L+ RG+ DMK IA + V E+ Sbjct: 70 GSTEGGIVLSGHTDVVPVDG-QKWDTDPFKLTEKDGALYARGSCDMKGFIATALALVPEY 128 Query: 115 VAAHPDHKGSIGFLITSDEEGPATDGTVIVCNQLKARGEQLDYCIVGEPTSAKQLGDMIK 174 +A P K I + DEE G ++ ++ RG ++D C+VGEPTS + Sbjct: 129 LAM-PRVK-PIHLAFSFDEE-IGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMN-----VV 180 Query: 175 NGRRGTMSGKLTVKGIQGHIAYPQLAKNPIHLAAPALAEL--VAEKWDEGNEY----YLP 228 +G V G H + N I AA + + A+ + Y +P Sbjct: 181 VAHKGINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVP 240 Query: 229 TSWQISNIHGGTGASNVIPGDVVIDFNFRFSTASTVDGLQQRV-----HAILDKHGFDY- 282 S +N G A N IP + FR +V +Q ++ +L K ++ Sbjct: 241 FSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFP 300 Query: 283 DLKWTV---GGLPFLTPRGNLSDALASAIKAETGLDTELSTTGGTSDGRFIAQICPQVIE 339 D + + G P L A+ ++A TG GT G F QI I Sbjct: 301 DARVEIDNFAGSPAL--EAVEQAAITELVRALTGDRQTRKVAYGTEAGLF-QQIGIPTIV 357 Query: 340 FGPPN-DSIHKIDEYIEVRYIDPLKNIYRRTMENL 373 GP + + HK +E++ + ++ + R+ ++L Sbjct: 358 CGPGDIGNAHKPNEFVTLAQMEHCEQFLRKLGKSL 392 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 101/227 (44%), Gaps = 34/227 (14%) Query: 49 NLWARKGTAQPL---LAFAGHTDVVP-TGPVDKWQSPPFVPTQRDGKLFGRGASDMKTSI 104 NL+A G A P F+GHTDVVP TG KW + PFV DGKLFGRGA DMK I Sbjct: 64 NLFATLGDAGPGRFGTVFSGHTDVVPVTG--QKWDTDPFVAHVADGKLFGRGACDMKGFI 121 Query: 105 A---AMVVAVEEFVAAHPDHKGSIGFLITSDEEGPATDGTVIVCNQLKARGEQLDY---- 157 A A + A++ P H F + DEE + +L A +Q D Sbjct: 122 AICMARLPAIDLARLHTPLH-----FSFSYDEE-----VGCLGVRELLADLQQNDIRPTG 171 Query: 158 CIVGEPTSAKQLGDMIKNGRRGTMSGKLTVKGIQGHIAYPQLAKNPIHLAA------PAL 211 I+GEPT + + +G S + +V G H + P L N I AA + Sbjct: 172 VIIGEPTMMQPV-----IAHKGKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREI 226 Query: 212 AELVAEKWDEGNEYYLPTSWQISNIHGGTGASNVIPGDVVIDFNFRF 258 A V + +++ +P S + + G A N+IP F RF Sbjct: 227 ALRVRHSGVQDDDFDVPYSSIATTLTSGGNAPNIIPDKAEFVFEHRF 273 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 112/284 (39%), Gaps = 49/284 (17%) Query: 3 KTLALTQELIALSSVTPEDKGC--QARLAELLAPLGFVCE-----TIQSGD-----VTNL 50 + + + Q+LI + + TP +AEL+A G+ E Q D +TNL Sbjct: 20 EEVGVLQQLIRIPTDTPPGNNAPHADAVAELVAGWGWAAEKHVVPAQQVADYGMQSITNL 79 Query: 51 WARK--GTAQPLLAFAGHTDVVPTGPVDKWQSPPFVPTQRDGKLFGRGASDMKTSIAAMV 108 R+ G P LA H DVVP G + W P+ DG+++GR A+ K+ A+ + Sbjct: 80 IVRRPYGDGGPTLALNAHGDVVPPG--EGWTHDPYGGEIADGRIYGRAAAVSKSDFASYL 137 Query: 109 VAVEEFVAAHPDHKGSIGFLITSDEEGPATDGTVIVCNQLKARGEQLDYCIVGEPTSAKQ 168 A A +G + T DEE G + Q R DY + A Sbjct: 138 FATRALEAVGASLRGGVELHFTYDEEFGGLLGPGWLLEQKLTRP---DYVL------AAG 188 Query: 169 LGDMIKNGRRGTMSGKLTVKGIQGHIAYPQLAK----------NPIHLAAPALAELVAEK 218 + + ++TV G H + P+ N I+ A P L E+ + Sbjct: 189 FSYNVVTAHNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPGLKEIRSA- 247 Query: 219 WDEGNEYYLP----TSWQISNIHGGTGASNVIPGDVVIDFNFRF 258 +P + + I GGT +NV+PG VV+ + R Sbjct: 248 --------IPGITHPTMIVGRIDGGTN-TNVVPGKVVLKMDRRM 282 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,188,964 Number of extensions: 49035 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 4 Length of query: 375 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 288 Effective length of database: 1,207,925 Effective search space: 347882400 Effective search space used: 347882400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)