BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0052.p (202 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311478|ref|YP_003775570.1| succinyldiaminopimelate aminotr... 324 4e-90 gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 72 4e-14 gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Her... 70 9e-14 gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent a... 61 7e-11 >gi|300311478|ref|YP_003775570.1| succinyldiaminopimelate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 420 Score = 324 bits (830), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 153/181 (84%), Positives = 168/181 (92%) Query: 1 VLPVNGSREALFSLTQTVVDPSQKDALVICPNPFYQIYEGSAYLSGAQPYFVNSDPARNF 60 +LPVNGSREALFSLTQTVVDP++ ALV+CPNPFYQIYEGSAYL+GAQPYFVNSDP RNF Sbjct: 110 ILPVNGSREALFSLTQTVVDPTRPGALVMCPNPFYQIYEGSAYLAGAQPYFVNSDPKRNF 169 Query: 61 APDFSQVPDDIWPRVKLLFLCSPGNPTGAVLSLDDWKKLFELSDRYGFVIASDECYSEIY 120 APDFSQVP D+W RV+LLF+CSPGNPTGAVL+L+DWK+LF LSDRYGFVIASDECYSEIY Sbjct: 170 APDFSQVPQDVWERVQLLFVCSPGNPTGAVLTLEDWKELFALSDRYGFVIASDECYSEIY 229 Query: 121 FKEEAPLGGLEAAHKLGRGYDRLIAFSSLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYL 180 F E+ PLGG++AA LGR Y RLI+FSSLSKRSNVPGMRSGFVAGDAAILKKFLLYRTY Sbjct: 230 FNEDPPLGGMQAARLLGRDYRRLISFSSLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYH 289 Query: 181 G 181 G Sbjct: 290 G 290 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 71.6 bits (174), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 6 GSREALFSLTQTVVDPSQKDALVICPNPFYQIYEGSAYLSGAQPYFVNSDPARNFAPDFS 65 GS+E L L +D K V+ PNP Y I+ A ++GA V P +F + Sbjct: 137 GSKEGLAHLMLATLD---KGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELE 193 Query: 66 QVPDDIWPRVKLLFLCSPGNPTGAVLSLDDWKKLFELSDRYGFVIASDECYSEIYFKE-E 124 + + +P+ K++ L P NPT + L+ ++++ +L+ + ++ D Y++I F + Sbjct: 194 RAVRESYPKPKMMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWK 253 Query: 125 APLGGLEAAHKLGRGYDRLIAFSSLSKRSNVPGMRSGFVAGDAAILKKFLLYRTY 179 AP + ++ + + F +LSK N+ G R GF+ G+A ++ ++Y Sbjct: 254 AP-----SIMQVPGAREVAVEFFTLSKSYNMAGWRIGFMVGNARLVAALARIKSY 303 >gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 409 Score = 70.5 bits (171), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 8/160 (5%) Query: 5 NGSREALFSLTQTVVDPSQKDALVICPNPFYQIYEGSAYLSGAQPYFVNSDPARNFAPDF 64 NG+ E + +++ + V+ P+P Y ++ + LSG P D + + PD Sbjct: 102 NGASELIVMSVNALLNTGDE---VLVPSPDYPLWTAAVSLSGGTPVHYVCDEQQGWQPDI 158 Query: 65 SQVPDDIWPRVKLLFLCSPGNPTGAVLSLDDWKKLFELSDRYGFVIASDECYSEIYFKEE 124 + + I P K + + +P NPTGA+ S++ K++ EL+ ++ +I +DE Y ++ + Sbjct: 159 ADIKKKITPNTKAIVVINPNNPTGALYSVEVLKEIIELARQHQLIILADEIYDKVLYDGN 218 Query: 125 APLGGLEAAHKLGRGYDRLIAFSSLSKRSNVPGMRSGFVA 164 A + I F+ LSK G R+G++ Sbjct: 219 THTSLASLADDV-----LFITFNGLSKNYRSCGYRAGWMV 253 >gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 385 Score = 60.8 bits (146), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 8/169 (4%) Query: 6 GSREALFSLTQTVVDPSQKDALVICPNPFYQIYEGSAYLSGAQPYFVNSDP-ARNFAPDF 64 G+ + + + V P + VI P Y Y + L+G P FV + A+ ++ + Sbjct: 97 GATQGILTSVLCAVHPGDE---VIVIEPVYDCYVPAIELAGGVPVFVQMEVGAQGYSIPW 153 Query: 65 SQVPDDIWPRVKLLFLCSPGNPTGAVLSLDDWKKLFELSDRYGFVIASDECYSEIYFKEE 124 +V + P+ +++ + +P NPTG+V+ D L ++ +I SDE Y + + + Sbjct: 154 DKVKAAVTPKTRMIMVNTPHNPTGSVMRAADVAALADIVRGTDILILSDEVYEHMVYDGQ 213 Query: 125 APLGGLEAAHKLGRGYDRLIAFSSLSKRSNVPGMRSGFVAGDAAILKKF 173 P L +L +R SS K +V G + G+VA AA+ +F Sbjct: 214 -PHESLARHPELA---ERSFINSSFGKTYHVTGWKVGYVAAPAALTAEF 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 680,220 Number of extensions: 27556 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 4 Length of query: 202 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,236,335 Effective search space: 149596535 Effective search space used: 149596535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)