BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0050.p (328 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 430 e-122 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 260 1e-70 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 238 6e-64 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 139 2e-34 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 135 7e-33 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 430 bits (1106), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/316 (68%), Positives = 268/316 (84%) Query: 1 MKTLKAKLLLALVVMWIGLLVLAAWSALNTRQNMINEREAGLKRVVETAEGILKSYAAEV 60 MK+LKA+LL ALVVMW GLL+LAAWSA + R+NMI+ER+ GL+RVVE A G++KSY A+V Sbjct: 1 MKSLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADV 60 Query: 61 AAGKTSLADAQKQALERIAAMRYDNDNYIFVFDSKPVVLMHPTNKSVVGKNVGDRKDSDG 120 AAG+ S +AQK ALERIAAMRYD DNY+F+FDS+PVVLM P+NK++VGKNV DRKDS+G Sbjct: 61 AAGRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEG 120 Query: 121 KLYYVEMVKVGKAQQRGYVNYMGRLPGADDTNRTQKVSYLIYYQPWDWLLVSGVFLNDVE 180 K YYVEM+KVG+ +Q G+V YMGRLPG DD+NRT K+SY+++ Q WDW +V+GVFL+DV+ Sbjct: 121 KAYYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQ 180 Query: 181 SDFYKNLLKLAGILVVIGVAVSAMMLAIIRNITRSLGGEPAYAVGVASRIASGDLTMAIK 240 + F +L +L GIL+V+GV VS MMLAIIR IT SLGGEPAYAV +A+RIA+GDLT+ ++ Sbjct: 181 AQFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ 240 Query: 241 TRAGDKTSLLYEMSVMRERLSSVIGGIRAGTDSIDTGAKEIAAGNMDLSSRTEQQAASLE 300 TR GD SLLY M+ MRERL+ VI GIR GTD+ID GA+EIAAGN+DLSSRTE+QA SL Sbjct: 241 TRPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLA 300 Query: 301 ETASSMEELTSTVKQN 316 TAS+M+ LT+TVKQN Sbjct: 301 TTASNMDGLTATVKQN 316 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 260 bits (664), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 139/317 (43%), Positives = 197/317 (62%), Gaps = 3/317 (0%) Query: 3 TLKAKLLLALVVMWIGLLVLAAWSALNTRQNMINEREAGLKRVVETAEGILKSYAAEVAA 62 +LK KL L LV W+ LL L+ W A TR I ERE GL+ V E A + YA + Sbjct: 5 SLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAKLESD 64 Query: 63 GKTSLADAQKQALERIAAMRYDNDNYIFVFDSKPVVLMHPTNKSVVGKNVGDRKDSDGKL 122 GK S DAQK A+ RI RY D Y+ + D+ V++MHP N + G+N+ D KD+ G Sbjct: 65 GKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDAKGNE 124 Query: 123 YYVEMVKVGKAQQ-RGYVNYMGRLPGADDTNRTQKVSYLIYYQPWDWLLVSGVFLNDVES 181 Y + G + +GY+ Y PG+D + K+ ++ ++PW+W L+ V+ +D+++ Sbjct: 125 LYKMIAATGSSGAGKGYLEYWWPRPGSDQP--SPKMGFVKRFKPWNWDLICSVYSDDIQA 182 Query: 182 DFYKNLLKLAGILVVIGVAVSAMMLAIIRNITRSLGGEPAYAVGVASRIASGDLTMAIKT 241 DF + L++ +L+ +GV +S + + RNI RS+GGEP A +A +IA+GDLT I T Sbjct: 183 DFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHT 242 Query: 242 RAGDKTSLLYEMSVMRERLSSVIGGIRAGTDSIDTGAKEIAAGNMDLSSRTEQQAASLEE 301 GD+ SL+ ++ R+RL + GI+ T+SI T EIA GNMDLS+RTEQQA SLEE Sbjct: 243 TQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEE 302 Query: 302 TASSMEELTSTVKQNXA 318 TAS+MEELT+TVKQN A Sbjct: 303 TASTMEELTATVKQNAA 319 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 238 bits (606), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 128/314 (40%), Positives = 194/314 (61%), Gaps = 2/314 (0%) Query: 3 TLKAKLLLALVVMWIGLLVLAAWSALNTRQNMINEREAGLKRVVETAEGILKSYAAEVAA 62 + KL L LV+ I LL ++ +SA+ R + ER+A L + +TA ++K Y A + Sbjct: 5 SFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALADS 64 Query: 63 GKTSLADAQKQALERIAAMRYDNDNYIFVFDSKPVVLMHPTNKSVVGKNVGDRKDSDGKL 122 G S DAQK A + I ++RY D Y + S +++MHP + GK++ + KD G Sbjct: 65 GALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAGNN 124 Query: 123 YYVEMVKVGKAQQRGYVNYMGRLPGADDTNRTQKVSYLIYYQPWDWLLVSGVFLNDVESD 182 +VE+ K G + G+V+Y+ P K S++I Y+PWDW L +G +++D+ + Sbjct: 125 LFVEITKAGSKPEGGFVHYL--WPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 Query: 183 FYKNLLKLAGILVVIGVAVSAMMLAIIRNITRSLGGEPAYAVGVASRIASGDLTMAIKTR 242 F + L ++A + + A+ A+++ I I R++GG+PA A VA+RIA GDLT I+T Sbjct: 183 FLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIETA 242 Query: 243 AGDKTSLLYEMSVMRERLSSVIGGIRAGTDSIDTGAKEIAAGNMDLSSRTEQQAASLEET 302 GD +SLLY + MR+ L S I I+A +I + ++EIA+GN+DLS RTEQQA S+EET Sbjct: 243 PGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEET 302 Query: 303 ASSMEELTSTVKQN 316 AS+MEELT+TVKQN Sbjct: 303 ASAMEELTATVKQN 316 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/127 (55%), Positives = 92/127 (72%), Gaps = 3/127 (2%) Query: 190 LAGILVVIGVAVSAMMLAIIRNITRSLGGEPAYAVGVASRIASGDLTMAIKTRAGDKTSL 249 L GI+ VI V+ I R++ + LGGEPAYA +A +IASGDLT + + GD TSL Sbjct: 201 LTGIVAVISALVA---FVITRSLLKQLGGEPAYAADIAQQIASGDLTADVDAKPGDTTSL 257 Query: 250 LYEMSVMRERLSSVIGGIRAGTDSIDTGAKEIAAGNMDLSSRTEQQAASLEETASSMEEL 309 L+ + MR+ L++++G +R GT +I+ + EIA GNMDLSSRTEQQA +LEETAS+MEEL Sbjct: 258 LFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALEETASAMEEL 317 Query: 310 TSTVKQN 316 STVKQN Sbjct: 318 MSTVKQN 324 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 69/126 (54%), Positives = 95/126 (75%), Gaps = 3/126 (2%) Query: 193 ILVVIGVAVSAMMLA--IIRNITRSLGGEPAYAVGVASRIASGDLTMAIKTRAGDKTSLL 250 ++ IGV V+A++ A + R++ R LGGEP YAV +A +IA GDL + I TRAGD SL+ Sbjct: 198 LISAIGV-VTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLM 256 Query: 251 YEMSVMRERLSSVIGGIRAGTDSIDTGAKEIAAGNMDLSSRTEQQAASLEETASSMEELT 310 M VMR++L++++ +R G+++I T + EIA GN+DLS RTEQQA +LEETASSME+L Sbjct: 257 AAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQLN 316 Query: 311 STVKQN 316 STVKQN Sbjct: 317 STVKQN 322 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 878,471 Number of extensions: 34028 Number of successful extensions: 350 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 64 Length of query: 328 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 242 Effective length of database: 1,212,660 Effective search space: 293463720 Effective search space used: 293463720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)