BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0049.p (175 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 126 8e-31 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 124 5e-30 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 103 6e-24 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 103 9e-24 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 102 2e-23 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 126 bits (317), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 76/125 (60%), Positives = 92/125 (73%), Gaps = 6/125 (4%) Query: 1 LIDDSVTRVDSGSELVQRAGQTMGEVVTAVQRVTDIMGEISSATEEQSSGIGQVNLAITQ 60 LI SV RV +GSELV +AG TM +V+ AVQRVTDIM EIS+A+ EQS+GI QV+ A+TQ Sbjct: 415 LIMHSVDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQ 474 Query: 61 MDQATQQNAALVEQAAAAAGSLEEQARRLKDAVAFFQAEGTAAVAAAPVVR-RAAAPAAA 119 MD+ATQQNAALVEQA+AAA SLE+QA+ L VA F+ G A P V+ AAA + A Sbjct: 475 MDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVNG-----AGPTVKPPAAAASRA 529 Query: 120 TTAPA 124 T PA Sbjct: 530 TVKPA 534 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 124 bits (310), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 101/192 (52%), Positives = 122/192 (63%), Gaps = 22/192 (11%) Query: 1 LIDDSVTRVDSGSELVQRAGQTMGEVVTAVQRVTDIMGEISSATEEQSSGIGQVNLAITQ 60 LI+DSV RV SGS+ V RAGQTMGEVV AV+ +TDI+GEIS+A+EEQ +GI QVNLAI + Sbjct: 417 LIEDSVQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGE 476 Query: 61 MDQATQQNAALVEQAAAAAGSLEEQARRLKDAVAFFQAEGTAAVAAAPVVRRAAAPAAAT 120 MDQ TQQNAALVEQAAAAAGSLEEQARRLK AV+ F+ +G + +APV A A Sbjct: 477 MDQVTQQNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENL-SAPVASSLATATATA 535 Query: 121 TAPAVANRVVPKTSSAASARKPAAA-----------------AARLPAAPKSAPAKSSPA 163 T AV + + ++ KP A A AA ++ AK+ PA Sbjct: 536 TPTAV-RKAPAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPAKAAPAAAKPASAAKALPA 594 Query: 164 SSPTDDGDWETF 175 DDGDWETF Sbjct: 595 G---DDGDWETF 603 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 103 bits (258), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 92/176 (52%), Positives = 109/176 (61%), Gaps = 14/176 (7%) Query: 1 LIDDSVTRVDSGSELVQRAGQTMGEVVTAVQRVTDIMGEISSATEEQSSGIGQVNLAITQ 60 LI+ SV +VD GS+LV+RAG TM EVV +V+RVTDI+GEISSA++EQS GI QVNLAI Q Sbjct: 417 LIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQ 476 Query: 61 MDQATQQNAALVEQAAAAAGSLEEQARRLKDAVAFFQAEGT-AAVAAAPVVRRAAAPAAA 119 MD+ TQQNAALVE+AAAAA SL+EQA L V FF+ E A+ P VR AA Sbjct: 477 MDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVR------AA 530 Query: 120 TTAPAVANRVVPKTSSAASARKPAAAAARLPAAPKSAPAKSSPASSPTDDGDWETF 175 + A A R P T +PAA A A K A P + D G WE F Sbjct: 531 SVARTAAVRHAPAT-------RPAATLAASAAPAKPASGSRLPGGAAEDGGSWEQF 579 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 103 bits (257), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 75/119 (63%), Positives = 92/119 (77%), Gaps = 1/119 (0%) Query: 1 LIDDSVTRVDSGSELVQRAGQTMGEVVTAVQRVTDIMGEISSATEEQSSGIGQVNLAITQ 60 LIDDSV +V++GS+LV++AG TM EVVT+VQRVTDI+GEI+ A+ EQS+GI QVN AITQ Sbjct: 418 LIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQ 477 Query: 61 MDQATQQNAALVEQAAAAAGSLEEQARRLKDAVAFFQAEGT-AAVAAAPVVRRAAAPAA 118 MD+ TQQNAALVE+AAAAA SL+ QA L AV+ F+ E A A P + AAPAA Sbjct: 478 MDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPAGKPASKPRAAPAA 536 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 102 bits (253), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/99 (65%), Positives = 83/99 (83%) Query: 1 LIDDSVTRVDSGSELVQRAGQTMGEVVTAVQRVTDIMGEISSATEEQSSGIGQVNLAITQ 60 LIDDSV +V++GS+LV +AG TM EVV++V+RVTDI+GEIS+A++EQSSGI +V A+ Q Sbjct: 496 LIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQ 555 Query: 61 MDQATQQNAALVEQAAAAAGSLEEQARRLKDAVAFFQAE 99 MD+ATQQNAALVEQAAAAA SL+EQA L VA F+ + Sbjct: 556 MDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLD 594 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.307 0.117 0.304 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 226,757 Number of extensions: 4886 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 62 Length of query: 175 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 96 Effective length of database: 1,245,805 Effective search space: 119597280 Effective search space used: 119597280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 127 (53.5 bits)