BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0048.p
         (676 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa...  1174   0.0  

>gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 1176

 Score = 1174 bits (3037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/664 (87%), Positives = 622/664 (93%), Gaps = 1/664 (0%)

Query: 1   VRLNSIKLSGFKSFVDPMNFQVPGQLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES 60
           +RL SIKLSGFKSFV+P +FQVPGQLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES
Sbjct: 1   MRLTSIKLSGFKSFVEPTHFQVPGQLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES 60

Query: 61  MQDVIFNGSTNRKPAGRASVELVFDNAMGKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQ 120
           MQDVIFNGST+RKPAGRASVELVFDN+ GKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQ
Sbjct: 61  MQDVIFNGSTHRKPAGRASVELVFDNSAGKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQ 120

Query: 121 AVRRRDIQDIFLGTGLGPRAYAIIGQGMISRIIEARPEELRIFLEEAAGVSKYKERRRET 180
           +VRRRDIQDIFLGTGLGPRAYAIIGQGMISRIIEARPEELRIFLEEAAGVSKYKERRRET
Sbjct: 121 SVRRRDIQDIFLGTGLGPRAYAIIGQGMISRIIEARPEELRIFLEEAAGVSKYKERRRET 180

Query: 181 ENRLHDTRENLTRLEDILRELNTNLEKLEAQAAVAKKFNELTGDQEEKQKLLWLLRKNEA 240
           ENRLHDT ENLTRLEDILRELNTNLEKLEAQAAVAKKF+EL  DQEEKQKLLWLLRKNEA
Sbjct: 181 ENRLHDTTENLTRLEDILRELNTNLEKLEAQAAVAKKFHELQNDQEEKQKLLWLLRKNEA 240

Query: 241 KAEQEKFFREIERAQIDLEEQTAKLRHVETELEHMRQAHYGAGDRLHTAQGHLYQTNSEI 300
           KAEQE+FF+EIERAQIDLEEQTAKLRHVETELEHMRQAHY AGDRLH AQGHLYQTNSEI
Sbjct: 241 KAEQERFFKEIERAQIDLEEQTAKLRHVETELEHMRQAHYAAGDRLHQAQGHLYQTNSEI 300

Query: 301 GSLEAQIKFVIESRNRLQSQLNSLTAQRDQWQRQGTQHQDDLAEAEIQLEEQGMRVEQAQ 360
           GSLEAQIKFVIESRNRLQ+QLNSL AQRDQWQRQGTQ Q++LAEAEIQLEE GMRVEQAQ
Sbjct: 301 GSLEAQIKFVIESRNRLQAQLNSLGAQRDQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQ 360

Query: 361 QAVQDGNDKVPTLEQAWREAQLKTTESRGKIMQIQQQIELESAHQRNASNILAGLAVRRE 420
            AVQD +D++P+LE AWRE+Q+KTTESRGKIMQ+QQQIEL+S HQRNASNIL+GLA RRE
Sbjct: 361 HAVQDTSDRLPSLEAAWRESQVKTTESRGKIMQVQQQIELQSTHQRNASNILSGLAARRE 420

Query: 421 RLAQEKSGLNMPDDAHLSNLKLQLEEKQASLEEASMYLEEAQEQLPKLEEERRTAQELVS 480
           RL QEK+G+ MPD+ HLSNL++QLEEKQASLEEASMYLEEAQEQLP+LEEERRTAQELVS
Sbjct: 421 RLMQEKNGMAMPDEVHLSNLRMQLEEKQASLEEASMYLEEAQEQLPRLEEERRTAQELVS 480

Query: 481 KETSELAQLEARQSALKQLQESVQTQGKVQPWLEKHELANLPRLWQKLHIDAGWETALES 540
           KETS  AQLEAR +ALKQLQESVQ QGKVQPWLEKH LA LPRLWQKLHI++GWETALE+
Sbjct: 481 KETSANAQLEARLTALKQLQESVQAQGKVQPWLEKHGLAELPRLWQKLHIESGWETALEA 540

Query: 541 VLRERMSALEVSNLDWAKAFFNDAPPAKLALFAPNPTAAPAEPAP-NGLKPFINLLQLND 599
           VLRERMSALE+SNLDWAKAFF+DAPPAKLAL+APN   A  E  P  GLKPF+ LLQLND
Sbjct: 541 VLRERMSALEMSNLDWAKAFFSDAPPAKLALYAPNAGLAQPEAQPVAGLKPFVTLLQLND 600

Query: 600 PGLRTLMQDWLHNVFIADDTASAFVDRSKLPAGAFFVTKQGHVVSQSSVRFYASDSEQDG 659
           PGLR LM DWL++++IADDTA+AF +R+KLP G  FVT+QGHVVS SSVRFYASDSEQDG
Sbjct: 601 PGLRALMNDWLNHIYIADDTATAFAERAKLPLGGLFVTRQGHVVSNSSVRFYASDSEQDG 660

Query: 660 MLAR 663
           MLAR
Sbjct: 661 MLAR 664


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,830,739
Number of extensions: 69911
Number of successful extensions: 346
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 584
Effective length of database: 1,184,250
Effective search space: 691602000
Effective search space used: 691602000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 134 (56.2 bits)