BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0043.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311481|ref|YP_003775573.1| transmembrane protein [Herbaspi...   443   e-125

>gi|300311481|ref|YP_003775573.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  443 bits (1140), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/370 (61%), Positives = 273/370 (73%), Gaps = 14/370 (3%)

Query: 6   DRVEPELYQMPERRPQMPAPEQQPITPPVTEADLDTPVEPYLS---IDTPLDSHDDYLAD 62
           +R EP  Y  PER+P        P+   + +A+ + P EP+L    +  P    D  L D
Sbjct: 83  ERAEPSFYDAPERKPV-----SAPVKAYLDQAEFE-PREPFLGDAPMAAPTQPGDAALTD 136

Query: 63  PLNVDNLNTDLSHVEATLNDTEMFAGEQAGQAGQGGQGGQSLAAPQRELPVDELVDCIIP 122
            +      + ++ V A   D       +   A       Q+  AP+RELPVDEL+DC IP
Sbjct: 137 EVLAQAPQSTVAQVIAGAQDPV-----ETAPAFAPPPEMQARLAPKRELPVDELIDCNIP 191

Query: 123 IALEVAVRGEKLLPGVQNLRHVGNKTVNFVGRTTEGEWEPIGHGSSYNALLAGVQLANRN 182
           IAL+  +RG+KLLP +QNLRHVGNK V+F+GRT EG+WE I HG  YNALLAG QLANR+
Sbjct: 192 IALDNPLRGDKLLPLLQNLRHVGNKPVHFIGRTLEGQWEAIAHGGVYNALLAGAQLANRS 251

Query: 183 NGLNELEYSELIVRLREFTDAIGAEPEIPDMIDVMKTAQALHQFVMDHDVQLGVNVRSNG 242
           N LNE+EYSEL++RLR+ TD++  EPE+PDM DV++TAQALHQF+ DHD QL VNVRS G
Sbjct: 252 NALNEIEYSELVMRLRDLTDSLSGEPELPDMPDVIRTAQALHQFIADHDAQLSVNVRSQG 311

Query: 243 APWNVTTLLAALTRQGFDRRTDGHLVMQDGEGEVLFSMSTNVTGAAETTDRLTLLLDVPR 302
           APW++ TLLAALTRQGFDRRT+G+LVMQDGEGEVLF++STN T   ETTDRLTLLLDVPR
Sbjct: 312 APWSLATLLAALTRQGFDRRTEGYLVMQDGEGEVLFALSTNATPTDETTDRLTLLLDVPR 371

Query: 303 VGPARDGYGAMIACARSLAMRLGGTVVDDSDQLLSDAALSDIAEQVGAFYSAMESAEIPA 362
           V PARDGYGA++ACARSLA RLGG +VDDSDQ LSD ALSDIAEQV AFYSAMESAEIPA
Sbjct: 372 VSPARDGYGALVACARSLAQRLGGVIVDDSDQPLSDEALSDIAEQVAAFYSAMESAEIPA 431

Query: 363 GSKRAMRLFS 372
           GS RA+RLFS
Sbjct: 432 GSTRALRLFS 441


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,096,748
Number of extensions: 44096
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)