BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0042.p
         (697 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herba...  1147   0.0  

>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score = 1147 bits (2966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/665 (83%), Positives = 601/665 (90%)

Query: 14  DWRTRAAWLKAALNRHNHAYYVLDNPSIPDAEYDKLFHELQGLELEHPELATSDSPTRRV 73
           DW  RA  L+A LNRHN++YYVLD PSIPDAEYD+LF ELQ LE  HPEL T DSPT+RV
Sbjct: 17  DWLVRAFALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELLTPDSPTQRV 76

Query: 74  GGAPLPQFEQVRHAIPMLSLGNGFDDEDIVAFDKRVKDGLSSETEIAYATELKFDGLAIS 133
           G  PLPQFE VRH IPMLSLGNGF D+DI AFDKRV+DGL +  E+ YATELKFDGLAIS
Sbjct: 77  GAGPLPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETLQEVRYATELKFDGLAIS 136

Query: 134 LRYENGVLVGAATRGDGTTGENVTANIRTVRAIPLRLHGDTAPQVLEVRGEVLMYKNDFA 193
           LRYENGVLV AATRGDGTTGENVTANIRTVRAIPLRLHG+  PQ+L+VRGEVLMYK+DFA
Sbjct: 137 LRYENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQLLDVRGEVLMYKDDFA 196

Query: 194 RLNQRQRDAGLKEFANPRNAAAGSLRQLDSKITAQRTLRFFAYGIGVLEGVPMPPSHSAL 253
           RLNQRQRDAG KEFANPRNAAAGSLRQLDS+ITAQRTLRFFAYGIGVLEG  MP SHSAL
Sbjct: 197 RLNQRQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGVLEGADMPSSHSAL 256

Query: 254 LDWYSELGLPVCKERAVVQGAEGLLKFYHGIGAKRAELPYEIDGVVYKVDRLDQQQQLGF 313
           LDWY +LGLPVCKERAVV GA GLL+F+ GIGAKR  LPYEIDGVVYKVDRLDQQ+QLGF
Sbjct: 257 LDWYQQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDGVVYKVDRLDQQKQLGF 316

Query: 314 VSRAPRFALAHKFPAQEALTVVQGIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNED 373
           VSRAPRFALAHKFPAQEALTVVQ IEVQVGRTGAITPVARL PVFVGGVTVTNATLHNED
Sbjct: 317 VSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNED 376

Query: 374 EVRRKDIQIGDTVIVRRAGDVIPEVVAYVPESRPADAKPFDMPKTCPVCGSEIIRLEDEA 433
           EVRRKDIQIGDTVIVRRAGDVIPEVVAYVPE RPADA+ F MP  CPVCGS I+R EDEA
Sbjct: 377 EVRRKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPAACPVCGSPIVRAEDEA 436

Query: 434 IARCSGGWVKCSAQRKGGLQHFASRRAMDVEGLGDQLIEQLVDKNIITTAADLYRLGLTA 493
           +ARCSGGW+KCSAQRKGGLQHFASRRAMD+EGLG+QL+EQLVD+ ++ T ADLYRLGL+A
Sbjct: 437 VARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDRKVVNTPADLYRLGLSA 496

Query: 494 LAELDRMAEKSAQNVLDALEKSKSTTLARFIYSLGIRHVGEATAKELARHFGNMDAVLAA 553
           LAELDRMAEKSAQNVLDAL+KSKSTTLARFIY+LGIRHVGEATAKELARHFG +D +LAA
Sbjct: 497 LAELDRMAEKSAQNVLDALQKSKSTTLARFIYALGIRHVGEATAKELARHFGGLDKILAA 556

Query: 554 NEEQLLEVADVGPVVARSIVSFFSDGLNVELVNQLRAAGIHWSEGAGIEIQAKTLAGKTF 613
           +E QLLEVADVGPVVA SI SFF D LNVELV QLRA G+HW E AG+E  AK LAGKTF
Sbjct: 557 SEAQLLEVADVGPVVATSIRSFFDDALNVELVEQLRAVGVHWPESAGVEAAAKHLAGKTF 616

Query: 614 VLTGTLPTLTRDEAAQMIEAAGGKVSGSVSKKTGYVVAGADAGSKLTKAEELGIAILDEE 673
           VLTGTLP L+RDEA+Q+IEAAGGKV+GSVSKKT YVVAGA+AGSKL KAEELGIAILDE+
Sbjct: 617 VLTGTLPNLSRDEASQLIEAAGGKVTGSVSKKTTYVVAGAEAGSKLAKAEELGIAILDED 676

Query: 674 GLQAL 678
           GL+AL
Sbjct: 677 GLKAL 681


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,249,814
Number of extensions: 100037
Number of successful extensions: 306
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 605
Effective length of database: 1,184,250
Effective search space: 716471250
Effective search space used: 716471250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)