BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0041.p
         (104 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...   113   3e-27
gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...    92   1e-20

>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  113 bits (283), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 57/60 (95%)

Query: 41  EIQLTDGIAALMHAQTVLAYRYEGQRYDCGSKLGYLKATVAMGMKHPETGAAFTEYLKQL 100
           EIQLTDGIA LM A++VLAYRY+GQRYDCGSKLGYLKATVAMGMKHPETGAAF+E+LK +
Sbjct: 233 EIQLTDGIAKLMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMKHPETGAAFSEFLKDV 292



 Score = 77.8 bits (190), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/39 (94%), Positives = 38/39 (97%)

Query: 1  MSKRIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLI 39
          M K+IKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLI
Sbjct: 2  MIKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLI 40


>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 91.7 bits (226), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 48/60 (80%)

Query: 41  EIQLTDGIAALMHAQTVLAYRYEGQRYDCGSKLGYLKATVAMGMKHPETGAAFTEYLKQL 100
           EIQLTD I+AL+  + +LAYRYEGQR+DCGSKLGYLKA VAMG KH E G+ F ++L+  
Sbjct: 203 EIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKAAVAMGFKHKEVGSGFAQFLQDF 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 318,127
Number of extensions: 11675
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 3
Length of query: 104
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 33
Effective length of database: 1,283,685
Effective search space: 42361605
Effective search space used: 42361605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)