BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0040.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformyl...   290   6e-80
gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbas...    76   2e-15

>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA
           deformylase/polypeptide deformylase [Herbaspirillum
           seropedicae SmR1]
          Length = 178

 Score =  290 bits (741), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 157/178 (88%)

Query: 1   MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60
           MAIREILKMGDPRLLRQA+PV +FGTPE+  L+ DMF+TMRAVNGAG    +    +QLV
Sbjct: 1   MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60

Query: 61  IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120
           IFGF +NQRYPDAP VPETVLINP LTPLS+++EEGWEGCLSVPG+RGVVPRWSRLRY+G
Sbjct: 61  IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120

Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178
           +D+ G  IDR+V+GFHARVVQHECDHL G+LYPMRI+DF RFGFTE+LFPELDP+ DD
Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178


>gi|300313962|ref|YP_003778054.1| polypeptide deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score = 75.9 bits (185), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 1   MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60
           MA+  IL+  DPRL + A PV  F    +  L+ADM ETM A  G G    +     Q+V
Sbjct: 1   MALLNILRYPDPRLHKIAAPVTVFDE-RIKKLVADMAETMYAAPGVGLAATQVDVHEQVV 59

Query: 61  IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120
           +     + +          V INP +   S+++    EGCLSVPG+   V R +R++   
Sbjct: 60  VIDVSDDGKNL-------QVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRA 112

Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLY 152
            D  G   +   D   A  +QHE DHL G ++
Sbjct: 113 FDADGKAFEVDADELLAVCIQHEMDHLKGKVF 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 614,741
Number of extensions: 25848
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)