BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0039.p
         (458 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp...   782   0.0  
gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp...   263   2e-71

>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/453 (84%), Positives = 409/453 (90%)

Query: 5   QMVGLDICGVDIVCNSVHAPLEEQEGGIVEVNAAPGLRMHLSPSYGKGRAVGDAIISTMF 64
           QMVGLDICGVD+VCNSVH  LEEQ GGIVEVNAAPGLRMHLSPSYGK R VG+AI+STM+
Sbjct: 403 QMVGLDICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMY 462

Query: 65  ADGDDARIPLVAVAGTNGKTTTVRLITHLLAQKGLRVGMTNTDGVYIDNQRTDTGDCSGP 124
            DGDD RIP+VAVAGTNGKTTTVRLITHLLA+ GLRVGMTNTDGVYID QRTDTGDCSGP
Sbjct: 463 EDGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGP 522

Query: 125 RSARNVLFHPDVDAAVLETARGGVLREGLGFDRCNVAVVTNIGMGDHLGLSYISTVEDLA 184
           RSARNVLFHPDVDAAVLETARGGVLREGLGFDRC VAVVTNIGMGDHLGLSYISTVEDLA
Sbjct: 523 RSARNVLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLA 582

Query: 185 VVKRVIVENVAPTGYAVLNAADAMVSSMAPSCPGAVIFFALDPTHPIMATHRAQGHRVVF 244
           VVKRVIVENVAPTG AVLNAAD MV+ MA SCPGAV FFALDPTHPIMATHRAQGHR+V+
Sbjct: 583 VVKRVIVENVAPTGTAVLNAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVY 642

Query: 245 RDGDDIVAAQGDQEIRLALKDIPLTRNGGIGFQVENTMASVGAAWALSLDWDIVRAGLRT 304
           RDGD IVAAQG  E RL L  IPLTR G IGFQVEN MASVGAAWAL+LDW+ +   L +
Sbjct: 643 RDGDAIVAAQGSFEKRLKLSGIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALAS 702

Query: 305 FISDVGTAPGRFNLFDYRGATVIADYGHNPDAINALVKAVESIPAKRRSVVISGAGDRRD 364
           FISD GTAPGRFNLFDY+GAT+IADYGHNPDAI AL+KAV+S+PAKRRSVVISGAGDRRD
Sbjct: 703 FISDSGTAPGRFNLFDYKGATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGAGDRRD 762

Query: 365 IDIRQQTEILGDAFDEVVLYQDQCQRGRADGEVLALLRQGLTNARRTTVTKEVFGEFLAI 424
           +DI +QTE+LGDAFDEVVLYQDQCQRGR DGEV+ALLRQGL+ A RT+  KE+ GEFLAI
Sbjct: 763 VDITRQTELLGDAFDEVVLYQDQCQRGREDGEVIALLRQGLSKASRTSDVKEINGEFLAI 822

Query: 425 DTALASLKDGDLCLILIDQIEEALAHIGKRVAE 457
           DTAL SL+ GDLCLILIDQ+EEALAHI  RV E
Sbjct: 823 DTALGSLQPGDLCLILIDQVEEALAHIDTRVKE 855


>gi|300311486|ref|YP_003775578.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 732

 Score =  263 bits (673), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/303 (46%), Positives = 193/303 (63%), Gaps = 2/303 (0%)

Query: 5   QMVGLDICGVDIVCNSVHAPLEEQEGGIVEVNAAPGLRMHLSPSYGKGRAVGDAIISTMF 64
           ++VGLDI GVDIV   +  PL++Q G IVEVNA PGL MHL PS GK R VG+AII  +F
Sbjct: 413 RIVGLDIAGVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLF 472

Query: 65  ADGDDARIPLVAVAGTNGKTTTVRLITHLLAQKGLRVGMTNTDGVYIDNQRTDTGDCSGP 124
              ++ RIP+V V GT+GKTT  RLI  ++   G  VG+   +G+Y   ++ + G+ +  
Sbjct: 473 GPEENGRIPIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANW 532

Query: 125 RSARNVLFHPDVDAAVLETARGGVLREGLGFDRCNVAVVTNIGMGDHLGLSYISTVEDLA 184
            +A  VL +  V+AAV E     +L EGL +DRC V VV NI   D L   YI   E +A
Sbjct: 533 DAAHRVLLNRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIA 592

Query: 185 V-VKRVIVENVAPTGYAVLNAADAMVSSMAPSCPGAVIFFALDPTHPIMATHRAQGHRVV 243
             VKR  V+ V P G AVLNA D +V+ MA  C G VIFF+ DP   ++A+H  +G R V
Sbjct: 593 TKVKRTQVDLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELVASHLKEGGRAV 652

Query: 244 FRDGDDIVAAQGDQEIRLALKD-IPLTRNGGIGFQVENTMASVGAAWALSLDWDIVRAGL 302
           F  G D++ A+G+++ +++  D IPLT NG + +QVEN +A+VGAAWAL +  +++RAG+
Sbjct: 653 FLRGGDLIQAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGISPEVIRAGI 712

Query: 303 RTF 305
             F
Sbjct: 713 ELF 715


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,495,286
Number of extensions: 66649
Number of successful extensions: 218
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,203,190
Effective search space: 445180300
Effective search space used: 445180300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)