BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0038.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp...   451   e-128
gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp...   228   5e-61

>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score =  451 bits (1159), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/297 (81%), Positives = 260/297 (87%)

Query: 1   MDVSRIRVLRGPNLWSRHTAIEAIVSCPEVERAIEGMPGFEVRLRARFPHIGFLQPAGEV 60
           MDVSRIR LRGPNLWSRHTAIEAIVSCPE ER I+ MPGFE+RLRARFP IGFL+P G  
Sbjct: 1   MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDNMPGFELRLRARFPQIGFLEPDGGK 60

Query: 61  KAVSMAHALQAAALGLQSQAGCPVTFSRTVPTVEAGVYQVIVEYSEEAVGRLAFELAQEL 120
           + VS+AHAL AAALGLQSQAGCPVTFSRTV TVE G+YQV+VEYSEE VGRLAF+LA EL
Sbjct: 61  QVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVGRLAFDLALEL 120

Query: 121 CNAALDDKPFDLADALARLRELDEDVRLGPSTGSIVAAAVKRGIPFRRLTDGSMVQFGWG 180
             AA  D PFDL   L R+RELDEDVRLGPSTGSIV AA+KRGIPFRRLT GSMVQFGWG
Sbjct: 121 VRAAQADAPFDLTATLTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRRLTQGSMVQFGWG 180

Query: 181 SRQKRIQAAETSNTSAIAESIAQDKELTKMLLNAAGVPVPNGRVVETVEDAWAAAQEIAA 240
           SRQKRIQAAETSNTSAIAESIAQDK+LTKMLL+AAGVPVPNGRVVETVEDA  AA+EI +
Sbjct: 181 SRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGS 240

Query: 241 PVVIKPRDGNQGKGVAVNISSREQIVAAFNAAVKISDEIIVERYLPGHDYRLLVIAR 297
            VVIKP DGNQGKGVAVNIS+ EQI  AFN A  ISDE+IVERYLPGHD+RLLVI +
Sbjct: 241 AVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDFRLLVIGK 297


>gi|300311486|ref|YP_003775578.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 732

 Score =  228 bits (581), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 10/308 (3%)

Query: 1   MDVSRIRVLRGPNLWSRHTAIEAIVSCPEVER-AIEGMPGFEVRLRARFPHI-----GFL 54
           ++  R   L+GPN+W+  +A+E  +   E+E      +PGF  RL    P +      + 
Sbjct: 4   IEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRCSYE 63

Query: 55  QPAGEVKAVSMA----HALQAAALGLQSQAGCPVTFSRTVPTVEAGVYQVIVEYSEEAVG 110
           +  G V+ +       H L+   L LQ+ AG P  F +   T   GVY+V+V    E V 
Sbjct: 64  ERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHETVT 123

Query: 111 RLAFELAQELCNAALDDKPFDLADALARLRELDEDVRLGPSTGSIVAAAVKRGIPFRRLT 170
           R A   A++L  AA++D+P+DL   L++LR + + + LGPST  IV AA +R IP  RL+
Sbjct: 124 RAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTIRLS 183

Query: 171 DGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKELTKMLLNAAGVPVPNGRVVETVED 230
           +G++VQ G G + +RI  AE+  TSAIAE I++DK+LTK LL   GVPVP GR+VE+ ED
Sbjct: 184 EGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVESPED 243

Query: 231 AWAAAQEIAAPVVIKPRDGNQGKGVAVNISSREQIVAAFNAAVKISDEIIVERYLPGHDY 290
           AW AAQ+I  PVV+KP D N G+GV +++++RE+I  A+  A++    ++VER++PG ++
Sbjct: 244 AWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPGLEH 303

Query: 291 RLLVIARR 298
           RLL++  +
Sbjct: 304 RLLIVGGK 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 885,930
Number of extensions: 30795
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)