BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0037.p
         (634 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp...   672   0.0  
gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp...   250   2e-67

>gi|300311486|ref|YP_003775578.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 732

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/394 (80%), Positives = 354/394 (89%)

Query: 1   MKNIEFLRILPLHGPNIWTYRPALEVWIDIGELEDFPSNIIPGFNERLTGWLPSLVEHRC 60
           MKNIEFLR L L GPNIWTYR ALEVWIDIGELEDFPSN IPGF +RLT WLP+L+EHRC
Sbjct: 1   MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRC 60

Query: 61  SYGERGGFLQRLKEGTWPGHIMEHVTLELQNLAGLPGGFGKARETSTRGVYKVVVRARHE 120
           SY ERGGF++RL EGTWPGHI+EHVTLELQNLAGLPGGFGKARET+ RGVYKVVVRARHE
Sbjct: 61  SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE 120

Query: 121 QVTRAALYAGRDLVMAAIEDKPFDVDATIEKLRDMVDSLCLGPSTACIVDAADERRIPSI 180
            VTRAALYA RDLVMAAIED+P+D+DAT+ KLR MVD LCLGPSTACIVDAADERRIP+I
Sbjct: 121 TVTRAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTI 180

Query: 181 RLSEGNLVQLGHGCKQRRIWTAETDQTSAIAESISRDKDLTKTLLQSCGVAIPEGRIVDS 240
           RLSEGNLVQLGHGCK RRIWTAE+DQTSAIAE ISRDKDLTK+LL++CGV +PEGR+V+S
Sbjct: 181 RLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVES 240

Query: 241 PADAWEAAEDIGLPVVVKPSDANHGRGVFIDLNTQAEVETAYKAALEEGSSVLVERFIRG 300
           P DAWEAA+DIGLPVVVKP DANHGRGVFIDLNT+ E+ETAYK ALEEGS VLVERF+ G
Sbjct: 241 PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG 300

Query: 301 NEHRLLIVGGKLAAAARGEPIFVVGDGVSTISQLIDVVNMDPRRGDLEEHPLNPVILDRE 360
            EHRLLIVGGKLAAAARGEPIF+VGDG ST+  L+D +N DPRRG LEEH L+PV+L+RE
Sbjct: 301 LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLERE 360

Query: 361 PAARLELERQGLSADSVPPNGKKVLLLRNGKXRS 394
           PAA LEL+RQ L+ +SVP  G+++LLLRNG   S
Sbjct: 361 PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSS 394



 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 72/88 (81%)

Query: 547 LKQGKRGVFVRNGDVIQATGDKEVRVSTVTAIPITGGGAVGFQIENVLAAVAATWALGIT 606
           LK+G R VF+R GD+IQA G+++ +VS+V AIP+T  GAV +Q+ENVLAAV A WALGI+
Sbjct: 645 LKEGGRAVFLRGGDLIQAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGIS 704

Query: 607 ADLIRAGIELFGTEQAEEQGKKRKAQTA 634
            ++IRAGIELFGTE+AEEQG K K Q A
Sbjct: 705 PEVIRAGIELFGTERAEEQGLKFKNQAA 732


>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score =  250 bits (639), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/388 (41%), Positives = 228/388 (58%), Gaps = 16/388 (4%)

Query: 4   IEFLRILPLHGPNIWTYRPALEVWIDIGELEDFPSNIIPGFNERLTGWLPSLVEHRCSYG 63
           ++  RI  L GPN+W+   A+E  +   E E    N+ PGF  RL    P +        
Sbjct: 1   MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDNM-PGFELRLRARFPQI-------- 51

Query: 64  ERGGFLQ--RLKEGTWPGHIMEHVTLELQNLAGLPGGFGKARETSTRGVYKVVVRARHEQ 121
              GFL+    K+     H +    L LQ+ AG P  F +   T   G+Y+VVV    E+
Sbjct: 52  ---GFLEPDGGKQVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEE 108

Query: 122 VTRAALYAGRDLVMAAIEDKPFDVDATIEKLRDMVDSLCLGPSTACIVDAADERRIPSIR 181
           V R A     +LV AA  D PFD+ AT+ ++R++ + + LGPST  IV+AA +R IP  R
Sbjct: 109 VGRLAFDLALELVRAAQADAPFDLTATLTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRR 168

Query: 182 LSEGNLVQLGHGCKQRRIWTAETDQTSAIAESISRDKDLTKTLLQSCGVAIPEGRIVDSP 241
           L++G++VQ G G +Q+RI  AET  TSAIAESI++DKDLTK LL + GV +P GR+V++ 
Sbjct: 169 LTQGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETV 228

Query: 242 ADAWEAAEDIGLPVVVKPSDANHGRGVFIDLNTQAEVETAYKAALEEGSSVLVERFIRGN 301
            DA +AAE+IG  VV+KP D N G+GV ++++T  ++  A+  A      V+VER++ G+
Sbjct: 229 EDALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGH 288

Query: 302 EHRLLIVGGKLAAAARGEPIFVVGDGVSTISQLIDVVNMDPRRGDLEEHPLNPVILDREP 361
           + RLL++G  L AAAR +P  V+GDGV TI QLID VN DP RGD     L  + LD   
Sbjct: 289 DFRLLVIGKTLVAAARRDPPQVIGDGVHTIRQLIDQVNADPLRGDGHATSLTKIRLD--D 346

Query: 362 AARLELERQGLSADSVPPNGKKVLLLRN 389
            A   L  Q L  +++P  G +V+L  N
Sbjct: 347 IALSVLSGQNLDPEAIPAQGVRVVLRNN 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,832,317
Number of extensions: 76662
Number of successful extensions: 341
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 3
Length of query: 634
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 543
Effective length of database: 1,188,985
Effective search space: 645618855
Effective search space used: 645618855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)